Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06036 ATGGAAGCCGAAACTCGACGGAAAATCGAGGAGATGGTGTTGGATATACTGAAGAATTCCAATATAGAAGAGACCACTGAGCTCAGCGTCCGAATCGCTGCCTCGGAGCGACTCGGCATCGACCTCTCCGACCCGGAGGGCAAGCAGCTTGTCAGAACCGTCGTCGAGTCCTATCTTCTCACCGCCGCCGCCGAGGAGAAACCGCCCGAAGAGTCTCAGTTGAGAGAGGTGGTGAAACCTAAGAAGGAGGACTCGGAACGCGTTATTTGCCAGCTATCAAACAGGAGGAATGTGGTGGTCCGAGATTTCAAAGGGACAGCATTGGTGTCTATTAGGGAGTACTATCATAAAGATGGAAAACAGCTTCCCGGTCCTAAAGGGATAGATTTATCTGCTGATCAATGGTCAACCTTCAAGAAGAGTGTTCCCGCCATAGAGGAAGCTATCACAAGGATGGAAGGAAGGATGAGATCAGAGCTTAATGGTGAGAAGAATGAAGAGGTGTCAAATTCAGTTGTTGATGTCGCTCCTCTTGAGCCTGTCCCTATTGAGATCATCCGTTTTGATGGGAAGAATTACGAATTTTGGGCTCAACAGATGGAATTACTCTTGAAACAGATAAAGATTGAATATGTGCTTACTGAACCATGCCCAAATGCTACATTAGGAGAAGAAGCAAGTGCTGGAGCCAAAGCTTCTAAAAAGAGATGGGTAAATGATGATTTAATGTGTCGTCGCAGCATCTTGAGCCATTTATCTGATCATCTTTTCAATCAGTATGCAAACAGAAAAATGAGTGCTAAGGAGTTATGGGAAGAGTTAAAATTTGTTTATCAGTTTGAGGAATATGGAACCAAGAGATCCCAGGTGAAAAAGTATATCGAATTTCAGATGGTTGATGAGAAAGCTATTGTTGAGCAAATTCAAGAATTTAACAGCATTGCAGACTCTATTGTTGATGCTGGAATGTCTATTGAGGAGAACTTTCATGTCTGTGTCATCATTTCAAAGCTTCCACTATCCTGGAAAGACTTTTGCATCAAGTTAATGCGTGAGGAGTACCTACCTTTCTGGAAGTTAATGGAACGTATAAGGATAGAGGAAGAAACTCGCAACGGAGTCAAACATGTGGGTGAACCTTCTAATGGTATTAGATTTCGCCAGGCCAATAAAGGTGGAGACAGGGTAGCTAACAATAACAATAAGCCACCGGGTATGCATAATGCCAAGAGCATCATAGCCTGTCATATTTGTGGAAAGAAGGGGCATATTTCTAAATACTGCTGGAGAAGATCTGACAAGCAAACTAATGAAAGGAAGGCAATGGAGGGTATGCGTGTATCTACAGCAGTTGAGTAA 1359 0.4349 MEAETRRKIEEMVLDILKNSNIEETTELSVRIAASERLGIDLSDPEGKQLVRTVVESYLLTAAAEEKPPEESQLREVVKPKKEDSERVICQLSNRRNVVVRDFKGTALVSIREYYHKDGKQLPGPKGIDLSADQWSTFKKSVPAIEEAITRMEGRMRSELNGEKNEEVSNSVVDVAPLEPVPIEIIRFDGKNYEFWAQQMELLLKQIKIEYVLTEPCPNATLGEEASAGAKASKKRWVNDDLMCRRSILSHLSDHLFNQYANRKMSAKELWEELKFVYQFEEYGTKRSQVKKYIEFQMVDEKAIVEQIQEFNSIADSIVDAGMSIEENFHVCVIISKLPLSWKDFCIKLMREEYLPFWKLMERIRIEEETRNGVKHVGEPSNGIRFRQANKGGDRVANNNNKPPGMHNAKSIIACHICGKKGHISKYCWRRSDKQTNERKAMEGMRVSTAVE. 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06036 452 Gene3D - 409 450 - -
Seca1g06036 452 Gene3D Transcriptional Coactivator Pc4; Chain A 80 156 IPR009044 GO:0003677|GO:0006355
Seca1g06036 452 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 3 154 IPR045125 GO:0003713|GO:0060261
Seca1g06036 452 Pfam gag-polypeptide of LTR copia-type 237 372 - -
Seca1g06036 452 Pfam DEK C terminal domain 5 59 IPR014876 -
Seca1g06036 452 MobiDBLite consensus disorder prediction 377 405 - -
Seca1g06036 452 SUPERFAMILY ssDNA-binding transcriptional regulator domain 89 151 IPR009044 GO:0003677|GO:0006355
Seca1g06036 452 ProSiteProfiles Zinc finger CCHC-type profile. 415 428 IPR001878 GO:0003676|GO:0008270
Seca1g06036 452 Pfam Transcriptional Coactivator p15 (PC4) 90 140 IPR003173 GO:0003677|GO:0006355
Seca1g06036 452 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 3 60 IPR014876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06036 Seca-Chr1 163632533 163635851 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Seca1g06036 Retrotran_gag_2 2e-16 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06036 - - gmx:100800963 565.074