Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06034 ATGTGTCATCAGTGCCAGCGGAATGATAAGAGTGGTGTTGTCTTTTGCTCAAGTTGCAACAGAAAACGCTATTGTTATGAATGCATTGAGAAGTGGTACCCAGGAAAAACCCGAGAGGAAGTTGCGAATGCATGTCCATTTTGTTGGGGCAATTGCAACTGCAAAGCTTGCTTACGGGAGGTTCCTGTGCTAGAGTACCCAGAAGTAAGTCCCAGTGTCAAAATACAACGACTGCTGTACTTACTATGTAAAGCCCTGCCAGTTCTGAGGCATATTCACAGGGAGCAGAGCTTGGAATTAGAGATTGAAGCCAAAATAAGGGGTAATCAACTGCAAGAAGTTGAGATAACAAGAACAAAGCTAGATGTAAATGAGCGCTTGTACTGTGACAATTGCAGTACATCTATAATTGGATTTTACCGTAGCTGCCCCAACACCAGTTGCTCTTATGATCTATGTCTCATGTGCTGTCAAGAGCTCAGAGAGGGTTGCCAACCTGGAGGTGTAGAAGCTGAAACATCTCATGAACAATTTGTAGAGAGTTTTCATAATCGTGATTCAACAAGAATTCAGCATAAAACACATAGTAAAAGATATGGGTGGGAGAGCCAACTTGCACCTGCTAGTTTTGATTTTCAAGCTGACACGCTCTCTCCCCTCCCTGAATGGAAAGCTAATAACGATGGTAACATTCCATGTCCTCCTAAGAAGTGTGGAGGTTGTGGTACTGCATTGCTAGAACTAAGACGCATTTATAAAGCTAATTGGGTAGCAAAACTGCTAAATAATGCTGAGGAACTCACTAGAGATTACATGCCACCGGATGTGGATATTACCGGAAAGTGTTCTTTATGCCAGCCAAATTTGGTTAAGGAAAAAGTCAATCCTGAAGTCAGGAGAGCGGCATTCCGGGATGGCAGTAATGATAATTTCTTATATAGTCCAAATGCCCTTGACATTGATGATGAGATTGAGCACTTCCAGAGGCACTGGATGAGGGGAGAACCTGTGGTTGTGAGAAATGTTCTGGACAAGACATCTGGTCTTAGTTGGGAACCAATGGTAATGTGGAGGGCTCTCAGAGAAACAGGTTCCAGAGTGAAGTTCACAGAGGAAACACGTAGTGTAAAGGCCATTGATTGCTTGGATTGGTGTGGGGTTGAGATTAATATTCACCAATTTTTTAAAGGCTACCTAGAGGGTCGAATGCATAAAAGTAAGTGGCCAGAAATGTTGAAATTGAAAGATTGGCCTTCATCAACCTCTTTTGAAGAGCGTTTGCCCAGGCATGGCACTGAATTCCTTGCTGCACTCCCCTATAGGGACTACACTGATCCAAAATCAGGTCTTTTAAATTTTGCCAGTAAACTTCCTGATGACTCACTTAAACCAGATTTGGGACCCAAAACGTACATTGCTTATGGATTTTCTGAAGAGCTAGGTAGAGGAGATTCTGTGACAAAACTGCACTGTGATGTGTCTGATGCGGTCAATGTGCTGACACACACAAACAAAGTGAATATAGCTCCCTGGCAGAGAAAAAGCATAGACAAATTGAAAAAGAAGTATGATGAAAAAGATGCTTATGAACTTTATGGTGAAGCATTACGTGATGTTGATGGAGGATCTAAATCTAAAGCATTGAATCATGATCAGAAGGCAGAGAATGGAGTCAACAGGATTTCACCAAGTAGCCAAATGGATCAGTGCATTTCATCTATAGCTGAAGACTTGAGTGGGAAGTCAGAAGCACAGAACGCGGAACAGTGTGATGAGAATATAAATTGCTCTCGGATTGACAGAAATGTCACTATAAGGAGCTCCTCTGTGGAAGATGGTGTTAGTATAACATCTACTGAAGTTTCACATCATTCCAGCTTCGGTTCAAGTAATACAAGCAATAAGAAAGACAGAACAAGGGTTGATATTATAGATGATAATGTGTCTGGTGATCCCAAGTTAGCGTCCAAACAAGGCCGGGGGAAAGATTCTTTAGAAATTGGAAATGGAACTGAGATTGTCCTTGGTGGCGCTGTTTGGGACATTTTCCGTCGGCAAGACGCCCCAAAGCTAATTGAGTACTTAAGAAAGCATAAGAAGGAATTCCGTCATATCAACAACCAACCTGTAGAATCTGTTATACATCCCATTCATGATCAGACTCTATTCTTAAATGAGAGGCATAAGAAACAGCTAAAAAGAGAGTTTAATGTTGAACCATGGACTTTTGAGCAACACCTTGGTGAGGCCGTTTTCATTCCAGCAGGATGTCCTCATCAAGTGAGAAATAGACAATCGTGTATAAAGGTTGCACTTGATTTTGTTTCTCCTGAAAATGTTGGAGAATGTTTACGACTAACTGGCGAGTTTCGTTTGCTCCCAAAATACCACAGAGCCAAGGAGGACAAATTGGAGGTTAAAAAGATGGCCCTTTATGCCGTAAGTAAAGCTGTTAGAGAAGTCAAAGAACTGATGAAGGTCACTGAGTAA 2490 0.4181 MCHQCQRNDKSGVVFCSSCNRKRYCYECIEKWYPGKTREEVANACPFCWGNCNCKACLREVPVLEYPEVSPSVKIQRLLYLLCKALPVLRHIHREQSLELEIEAKIRGNQLQEVEITRTKLDVNERLYCDNCSTSIIGFYRSCPNTSCSYDLCLMCCQELREGCQPGGVEAETSHEQFVESFHNRDSTRIQHKTHSKRYGWESQLAPASFDFQADTLSPLPEWKANNDGNIPCPPKKCGGCGTALLELRRIYKANWVAKLLNNAEELTRDYMPPDVDITGKCSLCQPNLVKEKVNPEVRRAAFRDGSNDNFLYSPNALDIDDEIEHFQRHWMRGEPVVVRNVLDKTSGLSWEPMVMWRALRETGSRVKFTEETRSVKAIDCLDWCGVEINIHQFFKGYLEGRMHKSKWPEMLKLKDWPSSTSFEERLPRHGTEFLAALPYRDYTDPKSGLLNFASKLPDDSLKPDLGPKTYIAYGFSEELGRGDSVTKLHCDVSDAVNVLTHTNKVNIAPWQRKSIDKLKKKYDEKDAYELYGEALRDVDGGSKSKALNHDQKAENGVNRISPSSQMDQCISSIAEDLSGKSEAQNAEQCDENINCSRIDRNVTIRSSSVEDGVSITSTEVSHHSSFGSSNTSNKKDRTRVDIIDDNVSGDPKLASKQGRGKDSLEIGNGTEIVLGGAVWDIFRRQDAPKLIEYLRKHKKEFRHINNQPVESVIHPIHDQTLFLNERHKKQLKREFNVEPWTFEQHLGEAVFIPAGCPHQVRNRQSCIKVALDFVSPENVGECLRLTGEFRLLPKYHRAKEDKLEVKKMALYAVSKAVREVKELMKVTE. 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06034 829 ProSiteProfiles Zinc finger RING-type profile. 2 48 IPR001841 -
Seca1g06034 829 Gene3D Cupin 309 592 - -
Seca1g06034 829 Gene3D Cupin 607 800 - -
Seca1g06034 829 FunFam Transcription factor jumonji (JmjC) domain-containing protein 610 800 - -
Seca1g06034 829 SMART cupin_9 427 791 IPR003347 -
Seca1g06034 829 Pfam JmjC domain, hydroxylase 677 774 IPR003347 -
Seca1g06034 829 MobiDBLite consensus disorder prediction 617 634 - -
Seca1g06034 829 MobiDBLite consensus disorder prediction 540 566 - -
Seca1g06034 829 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 1 826 IPR045109 GO:0032454|GO:0033169
Seca1g06034 829 ProSiteProfiles JmjC domain profile. 446 791 IPR003347 -
Seca1g06034 829 MobiDBLite consensus disorder prediction 617 663 - -
Seca1g06034 829 SUPERFAMILY Clavaminate synthase-like 324 813 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06034 Seca-Chr1 163616009 163626965 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca1g06034 JmjC 3.2e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06034 K15601 - vvi:100258626 1063.14