Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06031 ATGGAATCGAGTAGCCTTGAGAGCACTGTGTTATCCTTGACTATGATGGAAGAGGATGAGCATACTCATCAGTTTTCTTCAATCTCGAAGCTACATAACAATGCTCCCACTACTACCAGTGTCCATGACCTTCTTGAATGCCCCGTTTGCACAAATTCAATGTACCCTCCAATCCATCAGTGCCACAATGGCCATACCCTTTGTTCAACTTGCAAGACAAGGGTACACAATCGATGCCCAACTTGCAGGCAGGAACTCGGTGATATAAGGTGTCTAGCATTGGAGAAGATAGCAGAATCACTTGAACTGCCTTGCAGATACATCTCTCTTGGGTGTCCTGAGATATTTCCCTATTACAGCAAACTCAAACATGAGGCTATTTGTAACTTTAGACCATACAACTGCCCTTATGCTGGGTCAGACTGCTCTGTAGTTGGAGACATTCCATACCTTGTTGCTCATCTAAGGGATGATCACAGGGTTGACATGCATTCTGGATGCACTTTTAACCATCGCTATGTCAAGTCTAATCCACTGGAAGTAGAAAATGCTACATGGATGTTAACGGTAACTATAACTTCACCCCACAAAAACAAGTGTTTATATCAGGTTTTCCATTGCTTTGGTCAGTATTTTTGCCTCCATTTTGAAGCATTCCAGCTTGGTGTGGCTCCTGTTTACATGGCATTTCTCAGATTCATGGGTGATGAAAGAGAGGCAAGGAACTACAGCTACAGCCTGGAGGTGGGAGGAAATGGACGTAAACTAACTTTTGAAGGGAGTCCAAGAAGCATTAGAGATAGCCATAAGAAAGTCAGAGACAGTCATGATGGCCTCATCATATACCGTAACATCGCACTTTTCTTCTCAGGTGGTGACAGGAAAGAGTTGAAGCTACGAGTCACAGGAAGGATATGGAAAGAACAGCAAAACCCTGAAGGTGGAGTGTGCATACCAAACCTGTGCAGCTAG 972 0.4393 MESSSLESTVLSLTMMEEDEHTHQFSSISKLHNNAPTTTSVHDLLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYISLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSDCSVVGDIPYLVAHLRDDHRVDMHSGCTFNHRYVKSNPLEVENATWMLTVTITSPHKNKCLYQVFHCFGQYFCLHFEAFQLGVAPVYMAFLRFMGDEREARNYSYSLEVGGNGRKLTFEGSPRSIRDSHKKVRDSHDGLIIYRNIALFFSGGDRKELKLRVTGRIWKEQQNPEGGVCIPNLCS. 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06031 323 FunFam E3 ubiquitin-protein ligase SINAT3 97 155 - -
Seca1g06031 323 ProSiteProfiles Zinc finger SIAH-type profile. 100 160 IPR013010 GO:0008270
Seca1g06031 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 155 IPR013083 -
Seca1g06031 323 FunFam E3 ubiquitin-protein ligase SINAT5-like 156 302 - -
Seca1g06031 323 SUPERFAMILY TRAF domain-like 100 306 - -
Seca1g06031 323 ProSiteProfiles Zinc finger RING-type profile. 47 83 IPR001841 -
Seca1g06031 323 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 173 302 IPR008974 GO:0005515
Seca1g06031 323 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 30 308 - -
Seca1g06031 323 CDD RING-HC_SIAHs 45 83 - -
Seca1g06031 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 99 IPR013083 -
Seca1g06031 323 Pfam Seven in absentia protein family 89 302 IPR018121 GO:0005737|GO:0006511|GO:0007275
Seca1g06031 323 SUPERFAMILY RING/U-box 35 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06031 Seca-Chr1 163595023 163598121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g06031 27 309 C3H Transcription Factor Family AT2G41980 73.145 2.10e-155 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06031 K04506 - gmx:100792687 625.165