Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06025 ATGATAATTAAGCGGAATATGAAAGCTGAAATGCTGAACGTGAAGCGTTGTAAGCTAGAAGAAGACGAGGACTATGAGTATTCAGCGATTCAGAAGAAGCAGAGGGTGAACGGGTTTGGTTCTGGTGCTGACGGGTATTCTGGATCAGGGTCCAGTGAAGGATCGAATTGTGGTGGTGAGGTCCACTTCAATTCAAATTCTATGGAGTTGAATGGTACAAATATAAAAGCACCTCCATTATTGCGGTCATCGAGAGGTCGCGTTCAGATGCTTCCAGCCAGGTTCAGTGACTCGGTTCTTGATACATGGAAATGGAAGAATAATGGACGAATTAAAATAGAAGACAAACGCTCCGGCTATGAAGTAGATGATAATAGTCTACGAGATATTGGACTGGGATTTGAGAAACAGGGAAAGAGAAAAAAATGTGGCTCAAAAAATTCTCATTGTTTTCCTGATTCTGCTGAAATAGAAATGGGTGGATTAGGTTTCAATGATTTTGACTACGAGAAGCATGCCAACTCGTTTAAGAGCATTAAAACGACAGTGAATGGGGGTCGTTCATTGTTGGTTAAAACAGAGAGTAATGGCATTGATGAAAACGCCAAAAGAAGGAAAGACATTTATAAACTAGAGGATTTTGCTTTGGGTGATATAGTTTGGGCAAAATGTGGGAAACAATATCCGGCGTGGCCTGCTGTGGTCATTGATCCCATCTTGCAAGCTCCCAAGTCTGTTCTCAACTGTTGTGTTCCTGGTGCAATTTGCGTTATGTTTTTTGGTTATTCAAAAAACGGAAAGCAAAGGGACTATGCGTGGGCGAAGCAGGGGATGATATTCCCCTTCTTGGAATTCATGGGCAGATTCCAGGGGCAGACCCGATTGTACAAGAGCAAACTGAGTGACTTTCACATGGCAATGGAGGAGGCAATGCTGGCAGAAGATGGCATTTTGGACACACACTTGGGAGCTGAGCAAATTATGGATGGTGCAGCAGGTTCCTGTGTTGATCAGGAATATAGCTACCAAAACCAGGATACAATATCTTGTGCTGGCTGTGGTCTGATGTTGCCATGCAAAACCAAGAAGAAGATTAAGGATTCAAGCTGTGCTCCTCAGCATTATTGTAAACCCTGTGCAAAGTTACTAAAATCAAAACAATATTGTGGCATTTGCAAAAAGATTTGGCACCATTCAGATGGTGGGAATTGGGTATGCTGTGATGGTTGTAATGTTTGGGTGCATGCTGAGTGTGACAAAATTTCCAACAAACTTTTCAAGGATCTGGAAAATATAGATTACTATTGCCCAGATTGCAAGGGAAAGTTTACCGGTAAATTATCAGCATCACAAACATACAAATCAAAAATTAAATCAATAGAGAATAGCCAAAAGCCTGTGTTACCTGAAAAGCTACCGGTGGTGTGCAATGGCATGGAAGGAATTTATATTCCAAAGCTTCATTTAGTCGTGTGCAAGTGTGGCTTGTGTGGTTCAAGGAAGCAGACAGTGACTGAATGGGAACGGCATGCAGGTTGCAGAGCCAAAAAATGGAAATATAGTGTGAAAGTAGAAAGCACAAAGCAACCACTAATAAAATGGATCACAGAACACAATTCCCAAGCAGGAATTTTTCGACAATTAGATCAGAAACAGTTGCTTTCCTTTTTGCAAGAGAAGTATGAGCCAGATTATGCAAAATGGACAACAGAAAGATGTGCGATTTGTAGATGGGTTGAAGATTGGGAAGATAACAAAATCATTATCTGTAACAGGTGCCAAATTGCAGTCCACCAAGAGTGCTATGGGGCAAAGAATGTTCAAGATTTTACTTCCTGGGTTTGTAGAGTCTGTGAAACTCCTGATGTTGAAAGAGAGTGTTGCCTCTGTCCAGTAAAAGGTGGTGCACTGAAGCCAACTGATGTAGAGATGTTGTGGGTTCACGTAACATGCGCTTGGTTTCGGCCTGAAGTTCTTTTTCAAAACCATGAGGCAATGGAACCTGCTTCTGGAATCCTTAAGATTCCTCCTGATTCCTTTTTGAAGACATGCGTGATCTGTAAACAAAGCCATGGTTCCTGTACAAGTTGTTGCAAGTGTGCGACATATTTTCATGTGATGTGCGCCTCGAGAATGGGATATAGCATGGAATTGCATTCTACAGTGAAGAATGGGACTCAAATAACAAAGACACTGATATATTGTGCAGTTCACAGGGTCCCAAATCCAGATTCAGTACTGGTTGTGCATACACCCCAAGGGACATTCTCTCCAAGAACCTCGCTTCAAAGTCACAAGGGATGCTTTAGAGGATCAAGGACGGCTTCGTCACAGAATATAGAACTACTTGAATCTTCAACCTCTGAAAGTTATGAGGTTGAGCCGCTATCTGCAGCCAGGTGTCGTGTGTACAAAAGGTCTCTCAATAAGAAAGATGATGGACCAATACTTTACTTGCTTGGGGGGCCAAACATTCATTCTTTAGGTGCAATAACTCAATTGAACAGCAACAAGGATGCTGAAATATTTTCTTCTTTCAAGGAACGTCTTCGCCATTTACAAAAAACGGAAAATCATAGAGTTTGCTTTGGAAAGTCAGGTATTCATGGATGGGGCCTCTTTGCACGTAGAGATTTGCAAGAAGGAGAAATGGTTATTGAGTATCGTGGTGAGCAGGTAAGGCGTAGTGTTGCTGATCTGAGGGAAGCGAAATACCGTTCAGAAGGCAAAGATTGTTATCTGTTCAAGATTAGTGAAGAAGTGGTAATTGATGCAACGGATAAGGGCAATATGGCACGTTTAATAAACCATTCTTGCATGCCAAACTGCTATGCAAGGATTATGAGTTTAGGTGATCAGGAGAGCCGGATTGTTCTTATTGCCAAGACCAATGTCTCTGCTGGTGAAGAACTAACGTATGATTACTTGTTCGATCCAGATGAGCGGGATGAACTCAAGGTTCCCTGCCACTGCAAAGCTCCCAGTTGTAGGAAATTTATGAATTAG 3006 0.4195 MIIKRNMKAEMLNVKRCKLEEDEDYEYSAIQKKQRVNGFGSGADGYSGSGSSEGSNCGGEVHFNSNSMELNGTNIKAPPLLRSSRGRVQMLPARFSDSVLDTWKWKNNGRIKIEDKRSGYEVDDNSLRDIGLGFEKQGKRKKCGSKNSHCFPDSAEIEMGGLGFNDFDYEKHANSFKSIKTTVNGGRSLLVKTESNGIDENAKRRKDIYKLEDFALGDIVWAKCGKQYPAWPAVVIDPILQAPKSVLNCCVPGAICVMFFGYSKNGKQRDYAWAKQGMIFPFLEFMGRFQGQTRLYKSKLSDFHMAMEEAMLAEDGILDTHLGAEQIMDGAAGSCVDQEYSYQNQDTISCAGCGLMLPCKTKKKIKDSSCAPQHYCKPCAKLLKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDKISNKLFKDLENIDYYCPDCKGKFTGKLSASQTYKSKIKSIENSQKPVLPEKLPVVCNGMEGIYIPKLHLVVCKCGLCGSRKQTVTEWERHAGCRAKKWKYSVKVESTKQPLIKWITEHNSQAGIFRQLDQKQLLSFLQEKYEPDYAKWTTERCAICRWVEDWEDNKIIICNRCQIAVHQECYGAKNVQDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFRPEVLFQNHEAMEPASGILKIPPDSFLKTCVICKQSHGSCTSCCKCATYFHVMCASRMGYSMELHSTVKNGTQITKTLIYCAVHRVPNPDSVLVVHTPQGTFSPRTSLQSHKGCFRGSRTASSQNIELLESSTSESYEVEPLSAARCRVYKRSLNKKDDGPILYLLGGPNIHSLGAITQLNSNKDAEIFSSFKERLRHLQKTENHRVCFGKSGIHGWGLFARRDLQEGEMVIEYRGEQVRRSVADLREAKYRSEGKDCYLFKISEEVVIDATDKGNMARLINHSCMPNCYARIMSLGDQESRIVLIAKTNVSAGEELTYDYLFDPDERDELKVPCHCKAPSCRKFMN. 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06025 1001 SMART PHD_3 572 619 IPR001965 -
Seca1g06025 1001 SMART PHD_3 388 440 IPR001965 -
Seca1g06025 1001 SMART PHD_3 683 739 IPR001965 -
Seca1g06025 1001 ProSiteProfiles SET domain profile. 859 976 IPR001214 GO:0005515
Seca1g06025 1001 ProSiteProfiles Extended PHD (ePHD) domain profile. 624 739 IPR034732 -
Seca1g06025 1001 SUPERFAMILY Tudor/PWWP/MBT 212 315 - -
Seca1g06025 1001 CDD PHD_ATX3_4_5_like 572 618 IPR042011 -
Seca1g06025 1001 Gene3D - 209 316 - -
Seca1g06025 1001 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 622 740 IPR013083 -
Seca1g06025 1001 SUPERFAMILY FYVE/PHD zinc finger 568 635 IPR011011 -
Seca1g06025 1001 ProSiteProfiles Zinc finger PHD-type profile. 570 621 IPR019787 -
Seca1g06025 1001 CDD PHD_TCF19_like 389 439 - -
Seca1g06025 1001 Pfam PHD-finger 585 619 - -
Seca1g06025 1001 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 381 444 IPR013083 -
Seca1g06025 1001 CDD SET_SETD1-like 848 997 - -
Seca1g06025 1001 SUPERFAMILY FYVE/PHD zinc finger 386 444 IPR011011 -
Seca1g06025 1001 SMART PostSET_3 985 1001 IPR003616 -
Seca1g06025 1001 Pfam PWWP domain 217 313 IPR000313 -
Seca1g06025 1001 ProSitePatterns Zinc finger PHD-type signature. 573 618 IPR019786 -
Seca1g06025 1001 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 567 621 IPR013083 -
Seca1g06025 1001 Pfam PHD-finger 388 441 IPR019787 -
Seca1g06025 1001 CDD PWWP_AtATX3-like 217 316 - -
Seca1g06025 1001 SMART PWWP_4 214 283 IPR000313 -
Seca1g06025 1001 Pfam PHD-zinc-finger like domain 626 738 - -
Seca1g06025 1001 ProSiteProfiles PWWP domain profile. 216 285 IPR000313 -
Seca1g06025 1001 PANTHER PHD FINGER PROTEINS 75 420 - -
Seca1g06025 1001 ProSiteProfiles Post-SET domain profile. 985 1001 IPR003616 -
Seca1g06025 1001 FunFam Histone-lysine N-methyltransferase 622 741 - -
Seca1g06025 1001 ProSiteProfiles Zinc finger PHD-type profile. 386 442 IPR019787 -
Seca1g06025 1001 Gene3D SET domain 777 1001 IPR046341 -
Seca1g06025 1001 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1001 IPR025780 -
Seca1g06025 1001 SMART set_7 859 982 IPR001214 GO:0005515
Seca1g06025 1001 SUPERFAMILY SET domain 851 998 IPR046341 -
Seca1g06025 1001 FunFam Histone-lysine N-methyltransferase 833 1001 - -
Seca1g06025 1001 Pfam SET domain 870 975 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06025 Seca-Chr1 163544597 163553207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g06025 573 725 C2H2 Transcription Factor Family AT3G14740 33.951 4.60e-19 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca1g06025 zf-HC5HC2H_2 2e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06025 - - lja:Lj1g3v5034780.1 1513.43