Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06024 ATGGACATCTTGAAGTTCCTCCTTCACTTGTTCATCTTTTTTCCTGTCATATGTGCCTCCTCAGAAGACTGCCAATATTCTTGGTGCAGCGAAAATAACATCCTTATTCGTTTCCCCTTTCAACTAGAAGGTCAGCAACACCCTTACTGTGGCTATCCTGGTTTCAACTTAACTTGTACTAATGATAGCAAAACAGTTCTAAATTTTCCTTATAGCGGAGAATTCTATGTCCGCAACATCAACTATCTCAGACAACAGATACAAATCTATGACCCTGATGCTTGCCTTCCAAAACGTCTTCTAAGCCTCAATCTCTCAGCTTCTCCTTTCAATGCCGTTTATCTCAGTAGCTACACATTCTTAAGCTGCCCAACTCGGAACACAGGGCCACAATTCATTCCTGTTGACTGTCTTAGCAATTCTACACATTTTGTATCAGCTATTCCTTCAGTGAACTTGACCAATTCATTGCCTGAGTATTGCCATGTTATCAGAAACCTCTCAGTTCCAGTTTCAAGGTCAGGGCGATATGAGGAAATTTTCAGAGATCAACTTAGTGAAGATCTTCGATTAACATGGTATTCACCTGACTGTAGATATTGCGAATTGCAAGATGGCAGGTGCGGATTTGAGAGCAGAAACAGTGATCAAGTTCGTTGTTTCTCTGATAACCAAACGGGTCGTTCACGAGATGGTCTTCGGGTTTTCAGAATCATCTTATTATCCATTGCGGGACCAGCTGTGATGTGTGCCATTGGGATGGCATGCTTCAAGCACAGAAGTGGCATTAGTAGTGCACCCAGAATTTCTGCTGTACAGAGGTTTGCACCAACAGCAATATTAATATCACCACAACCAGCCATTACTATGGTTGGTCTGGATGAGTCTACAATTGAGTCTTTTCAGAAGCTTGTACTTGGGGAGAGCCGAAGACTGCCGGGACCCAATGATGGATTTTGTTCAATATGCCTGTCAGAGTACAGCAGCAAGGAGACAATAAGATGCATTCCTGAGTGCTCACACTGTTTCCATGCTCACTGCATAGATGAATGGCTTCGCATGAACAGTACATGCCCACTTTGCCGCAACTCCCCCTCCCCTTCTCCTCTTGTTATGTCCAGTAATCCTTGA 1131 0.4341 MDILKFLLHLFIFFPVICASSEDCQYSWCSENNILIRFPFQLEGQQHPYCGYPGFNLTCTNDSKTVLNFPYSGEFYVRNINYLRQQIQIYDPDACLPKRLLSLNLSASPFNAVYLSSYTFLSCPTRNTGPQFIPVDCLSNSTHFVSAIPSVNLTNSLPEYCHVIRNLSVPVSRSGRYEEIFRDQLSEDLRLTWYSPDCRYCELQDGRCGFESRNSDQVRCFSDNQTGRSRDGLRVFRIILLSIAGPAVMCAIGMACFKHRSGISSAPRISAVQRFAPTAILISPQPAITMVGLDESTIESFQKLVLGESRRLPGPNDGFCSICLSEYSSKETIRCIPECSHCFHAHCIDEWLRMNSTCPLCRNSPSPSPLVMSSNP. 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06024 376 Pfam Wall-associated receptor kinase C-terminal 156 224 IPR032872 -
Seca1g06024 376 Pfam Wall-associated receptor kinase galacturonan-binding 24 91 IPR025287 GO:0030247
Seca1g06024 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 367 IPR013083 -
Seca1g06024 376 SUPERFAMILY RING/U-box 313 365 - -
Seca1g06024 376 CDD RING-H2_EL5-like 320 362 - -
Seca1g06024 376 Pfam Ring finger domain 320 362 IPR001841 -
Seca1g06024 376 ProSiteProfiles Zinc finger RING-type profile. 320 362 IPR001841 -
Seca1g06024 376 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 366 IPR046948 -
Seca1g06024 376 SMART ring_2 320 361 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06024 Seca-Chr1 163542046 163543710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g06024 22 368 C3H Transcription Factor Family AT2G46495 44.318 1.18e-94 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06024 - - gmx:100799895 542.347