Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06023 ATGGAGTACGACAACAGCAACAGCAACAGCAACAAGATGTTCAACCTGTTCGTGAAGCACTTGGACGGGAAAACCCTAACCCTATTATTCCCATCTCCGATCCTTTACGCTAGTTCCATTAAGGATCGCCTTTTCGAGCTCACCGGAATCCCCACTCAACACCAGCGCCTGGTCACCGGTTGCCGCCACCTGAACGACGAAAAATCGGTGATATGTTGCTCGCCAGAAGAAGGGAACATGTTCCCGTCGGTGCGGCTACTGCTGCGGCTGAAAGGTGGGAAGGGAGGGTTCGGGTCGCTTCTGCGTGGGGCGGCGACGAAGGCTGGGCAGAAGAAGACGAACAATTTCGACGCTTGCAGGGATATGAGTGGGCGAAGGCTGAGACACGTGAACGCTGAGAAGAGATTGGAGGAGTGGAAGGCAGGGGAAGAGGAGAGAAGGCTTGAGAAGGTTGCAGAGGAGTTTCTGAAGAAGCAGATGAAGAAGGGTAAGAAGGGTAACGGTGATGGTGAGGCACACAAGTACGTCGCAAAATATAGGGAGGAGTCTGAACGCTGCGTTGCAGAGGTTGCCTTGTCTGTTAAGGAGGCTTTGTTGTTTAAGCGCAAGTCTTCACAATCAGAAGCTTCCCCTCCTCGTGATGCCAAGAAGTTGAAGATATGGATGGGGAAGAGGAAATTGAATGAAAGTGATAGTGATGATTCTGATGATGATGAGGGGGAAACTGAGAAATCTGTGTTGTTAAATAGTCAGAATGAGTCAGGCTCGAATAAGGGTGAAGACAGTTCAGGTTCTGTTACTGCTCAGAAGCAGGATGGAGGCTCTTCTGGTGCAGGCACATGTGAAAGTGGATCTGAAGAAGAGAAAGAAACTGTTGTAGATGAAGGCAAAGTGGAATCTTTTGGATCCCAGAGTAGTGAACCTATTCAGCCCAAGCCGAGTGTTGCCACTGAACCTGTGATGATGGAGGCTAATGTTATGCCTTGTTCAGAATCAATAGTTTCTGAAATTAATACTGAAGATAATGGATCTCAGGATTGCAATGGAGCTGTAGCTGACAAGTTTGATGGCACTGTTAGTCAAGCCTCAAGTGTTCTGAGCTCTGAAACACTGGCCGGTGCAGGCAAATCTAATGACATGGAAATTGATGCATCTCTTGAGCATAAAGCAGCAGTCAATGAAGAAAGCTTGCCAAGCACCAGTGTTCCAGCATTGGATGAGCCTCTGAATTTTGATGCTTTTAATTCAGCTGCGGAACTTGAGGTTCTTGGCTTGGAAAAGTTGAAGTCTGAACTGCAGTCACGTGGGTTAAAATGTGGAGGTACTTTGCAGGAGCGGGCTGCCAGGCTATTTCTTTTAAAATCGACACCCCTGGATAAACTTCCAAAGAAGCTGCTTGCGAAGAAGTGA 1410 0.4801 MEYDNSNSNSNKMFNLFVKHLDGKTLTLLFPSPILYASSIKDRLFELTGIPTQHQRLVTGCRHLNDEKSVICCSPEEGNMFPSVRLLLRLKGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEWKAGEEERRLEKVAEEFLKKQMKKGKKGNGDGEAHKYVAKYREESERCVAEVALSVKEALLFKRKSSQSEASPPRDAKKLKIWMGKRKLNESDSDDSDDDEGETEKSVLLNSQNESGSNKGEDSSGSVTAQKQDGGSSGAGTCESGSEEEKETVVDEGKVESFGSQSSEPIQPKPSVATEPVMMEANVMPCSESIVSEINTEDNGSQDCNGAVADKFDGTVSQASSVLSSETLAGAGKSNDMEIDASLEHKAAVNEESLPSTSVPALDEPLNFDAFNSAAELEVLGLEKLKSELQSRGLKCGGTLQERAARLFLLKSTPLDKLPKKLLAKK. 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06023 469 Gene3D - 9 93 - -
Seca1g06023 469 MobiDBLite consensus disorder prediction 207 231 - -
Seca1g06023 469 SUPERFAMILY Ubiquitin-like 9 79 IPR029071 -
Seca1g06023 469 MobiDBLite consensus disorder prediction 201 322 - -
Seca1g06023 469 MobiDBLite consensus disorder prediction 298 312 - -
Seca1g06023 469 ProSiteProfiles Ubiquitin domain profile. 14 70 IPR000626 GO:0005515
Seca1g06023 469 PANTHER SPLICING FACTOR SF3A-RELATED 15 468 - -
Seca1g06023 469 MobiDBLite consensus disorder prediction 245 282 - -
Seca1g06023 469 Pfam Silencing defective 2 N-terminal ubiquitin domain 15 159 IPR024974 -
Seca1g06023 469 Pfam Replication stress response SDE2 C-terminal 400 468 IPR025086 -
Seca1g06023 469 CDD Ubl_ubiquitin_like 16 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06023 Seca-Chr1 163539533 163542842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g06023 395 468 C2H2 Transcription Factor Family AT5G06160 45.946 2.40e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06023 K25059 - gmx:100781694 602.823