Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06020 ATGAATGCAAAGGGACATAAGTTTGTGAGGTTTGAGGACTTCAAATCCGAGTCATCTTTTAGTATAGAGCAGGAAGATTCTGTAAACAATGGATATCACACAAGAAAATTTAGACCAAGTGTAAATGCTATTTTGAAGAGTATCGGAAGAAGACTAGAGAGTGGGTCAGAGAAGATAAAGAACTTGAGAAGACCTTCAGCTGTCCACCCTGTAAGCAATGGACAAACAAAAAAGCCGGCTTCTAGGCGCAAAATTCATGATCCACAGGGGCCAATGCTTCAGAGATGGAACAAAATCTTTGTAATCACTTGTGTGATGGCAGTCTCTGTGGACCCACTGTTCTTTTACATTCCAGTGATCCATGGGAAAGAGAAATGCCTTGATTTGAATGGAACATTGCAGATTACTACTAGTGTTCTTCGCACTTTCTTTGATCTTTTCTACATTCTCCGCATAATATTTCAGTTTCAAACAGGGTTTATTGCCCCTTCTTCTCGTGTTTTTGGAAGGGGTGATCTGATTGATGATCCAGTGGCAATAGTGAAAAGATACTTAAGCTCTCACTTCATCATTGACATTCTATCAATTCTTCCACTCCCACAGGTGGTTGTTTTAGCTATAATTCCAAACATCAAAGATTCAGTTCCATTTGTAGCAAAGGATTTGTTGAAATATATAGTACTAATCCAGTATGTGCCAAGGCTGCTGCGGATCTATCCACTATTCAAAGAAGTAACTAGAACTTCTGGCATATTGACAGAGACAGCATGGGCTGGGGCTGTTTATAATCTTTTTCTCTATATGCTAGCAAGTCATGTGGTTGGAGCTAACTGGTATCTGCTTTCAATAGAATCAGAGGTGCGGTGCTGGCGCCGAGAGTTGAATAACGCTTCGCTCTTTCATGAATCTTACTTGGGCTGTGGTGGAGCCCGGGATCGAGCTGTCTTTTCACGTCTCAATAGCACTTGCTCTTTCGTTGACCCTGATCAAATCAAGGATGCAAACACCTTCAATTTTGGAATATTTTTCGACGCTCTAGATTCAGGTGTGGTAGATTCAACTACTGATTTTCCTCAGAAATTCTTCTACTGCTTTTGGTGGGGTTTGCGCAATTTAAGTTCACTTGGACAAAACCTCAAGACAAGTACTTATATTGTGGAGATAGCCTTTGCAATCTTCATTGCCATCTTTGGATTGGTTTTATTCTCATTACTTATTGGAAACATGCAGACATTTTTACAGAAATACCTGGAATCTACAACTGTTAGGGTGGAAGAGATGAGAGTGAAGAGGCGGGATGCTGAACGGTGGATGTCCCACCGTATGCTACCTGAGAACTTGAAGAAAAGAATTAGAAGGTATGAACAGTACAAATGGCAAGAAAATAGGGGTGTTGAGGAAGAGGCATTAATTCGTAACCTCCCTAAAGATCTCAGAAGGGACATAAAGCGCCATCTTTGCTTTACTTTAGTTAAAAAGGTGCCAATGTTTGAGAAAATGGATGAGCAGTTGTTGGATGCAATGTGTGATAGGCTGAAGCCAGTCCTTTATACAGAGAAGAGCTGCATTGTTCGTGAAGAAGATCCAGTTGATGAGATGCTTTTCATTATGCGTGGAAAAGTTTCTACCATGACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCCTTATTCCTCAAGGCTGGTGACTTCTGTGGAGAGGAGCTTCTAACATGGGCTTTGGATCCCAACTCCTCCTCAAATCTACCCGTTTCAACTAGAACAGTAGAAACTATATCAGAAGTTGAAGCCTTTGCTCTTATGGCTGATGACTTGAAGTTTGTTGCTTCCCAATTTCGACGTCTCATTAACAGCAAACAGCTCCAGCAGACTTTCAGGTTCTATTCCCCACAATGGAAGACATGGGCTGCCTGCTTCATACAAGCAGCTTGGCGTCGATACTGGAAAAGGAAGAATGATAGGTCATTTCTTGAAGCAGAAGACAAGCTACAAGATGTTCTTGCAAATGAGGATGGCTCCACCCTAAGCCTTGGTGCAACCATATATGCATCAAGGTTTGCTGCCAATGCATTACGAGCCTTGAGAGAAAATAACAGACACAACAGAATGCCGCAGAGACTACTACCTCTGTTACCTCCAAAGCCAGCTGAGCCAGATTTCACTGCTCAGAAAAACTAG 2178 0.4174 MNAKGHKFVRFEDFKSESSFSIEQEDSVNNGYHTRKFRPSVNAILKSIGRRLESGSEKIKNLRRPSAVHPVSNGQTKKPASRRKIHDPQGPMLQRWNKIFVITCVMAVSVDPLFFYIPVIHGKEKCLDLNGTLQITTSVLRTFFDLFYILRIIFQFQTGFIAPSSRVFGRGDLIDDPVAIVKRYLSSHFIIDILSILPLPQVVVLAIIPNIKDSVPFVAKDLLKYIVLIQYVPRLLRIYPLFKEVTRTSGILTETAWAGAVYNLFLYMLASHVVGANWYLLSIESEVRCWRRELNNASLFHESYLGCGGARDRAVFSRLNSTCSFVDPDQIKDANTFNFGIFFDALDSGVVDSTTDFPQKFFYCFWWGLRNLSSLGQNLKTSTYIVEIAFAIFIAIFGLVLFSLLIGNMQTFLQKYLESTTVRVEEMRVKRRDAERWMSHRMLPENLKKRIRRYEQYKWQENRGVEEEALIRNLPKDLRRDIKRHLCFTLVKKVPMFEKMDEQLLDAMCDRLKPVLYTEKSCIVREEDPVDEMLFIMRGKVSTMTTNGGRTGFFNSLFLKAGDFCGEELLTWALDPNSSSNLPVSTRTVETISEVEAFALMADDLKFVASQFRRLINSKQLQQTFRFYSPQWKTWAACFIQAAWRRYWKRKNDRSFLEAEDKLQDVLANEDGSTLSLGATIYASRFAANALRALRENNRHNRMPQRLLPLLPPKPAEPDFTAQKN. 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06020 725 Gene3D - 98 417 - -
Seca1g06020 725 MobiDBLite consensus disorder prediction 63 87 - -
Seca1g06020 725 SUPERFAMILY Voltage-gated potassium channels 87 415 - -
Seca1g06020 725 SMART cnmp_10 496 627 IPR000595 -
Seca1g06020 725 FunFam Cyclic nucleotide-gated ion channel 1 494 612 - -
Seca1g06020 725 Gene3D Jelly Rolls 494 614 IPR014710 -
Seca1g06020 725 CDD CAP_ED 496 628 IPR000595 -
Seca1g06020 725 SUPERFAMILY cAMP-binding domain-like 425 613 IPR018490 -
Seca1g06020 725 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 59 720 - -
Seca1g06020 725 ProSiteProfiles cAMP/cGMP binding motif profile. 496 580 IPR000595 -
Seca1g06020 725 MobiDBLite consensus disorder prediction 702 725 - -
Seca1g06020 725 FunFam Cyclic nucleotide-gated ion channel 1 423 487 - -
Seca1g06020 725 ProSiteProfiles IQ motif profile. 633 662 IPR000048 GO:0005515
Seca1g06020 725 Gene3D Helix hairpin bin 423 487 - -
Seca1g06020 725 Pfam Ion transport protein 95 415 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06020 Seca-Chr1 163525221 163530573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g06020 1 722 Ion Channels AT5G53130 65.116 0.0 931
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06020 K05391 - gmx:100797784 1174.07