Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06013 ATGGAAGAAACCACCAAGAGGAAACATGTTACTCTTATCAATGAACTAATCCAAGGAAAGGAGCTAGCAAATCAGCTCAGTAGCTTTCTTGTCTCTTCTCCATCATCCCATCAAACCAATGAATTCTTGATTGAGCAAATACTTTCCTCCTACGAGAAAGCTATTTCCATGCTTAACTCTGTGTCCAATGCGGTGGGAGTGGGTGAGATTATGACCCCCAATGGCAACATCATGGATTCCCATTGCTCTGATGGGAGCCCCAGAAGTGAGGTCATGGACCTTGAATTTGAGCACAAAGCTGCTTTCAAGAAAAGAAGGACCATGCCTAGATGGACAGAACAAGTGAAGATTTGCTCAAAAACAGGACTTGAGGGGTCTTTGGATGATGGATATAGTTGGAGAAAATATGGGCAAAAGGATATTCTTGGAGCTAAGTTTCCCAGGAGCATGAGATAA 456 0.4298 MEETTKRKHVTLINELIQGKELANQLSSFLVSSPSSHQTNEFLIEQILSSYEKAISMLNSVSNAVGVGEIMTPNGNIMDSHCSDGSPRSEVMDLEFEHKAAFKKRRTMPRWTEQVKICSKTGLEGSLDDGYSWRKYGQKDILGAKFPRSMR. 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06013 151 ProSiteProfiles WRKY domain profile. 122 151 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g06013 151 Gene3D WRKY domain 115 151 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g06013 151 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 10 149 IPR044810 GO:0003700
Seca1g06013 151 SMART WRKY_cls 127 151 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g06013 151 SUPERFAMILY WRKY DNA-binding domain 126 149 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g06013 151 Pfam WRKY DNA -binding domain 128 149 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06013 Seca-Chr1 163392404 163393176 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g06013 11 149 WRKY Transcription Factor Family AT4G23810 38.690 2.30e-27 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca1g06013 WRKY 9.5e-08 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06013 - - gmx:100790050 207.608