Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05980 ATGCCGAAGAATAAGGGAAAGGGAGGAAAGAACAGAAAAAGGGGGAAAAACGAAGCCGATGACGAGAAGAGAGAGCTGGTGTTCAAGGAAGATGGTCAAGAATACGCGCAGGTCTCTCGCATGCTTGGGAATGGTCGTTGCGAGGCCATGTGCATTGACGGCACAAAACGCCTCTGTCACATCCGCGGCAAGATGCACAAGAAGGTTTGGATCGCCGCCGGTGATATCATCCTCGTCGGACTCCGTGACTACCAGGATGATAAGGCTGACGTCATCCTCAAGTACATGCCTGACGAGGCCAGGCTCTTGAAGGCCTATGGCGAGTTGCCTGATTCCACTCGCCTCAATGAGGGTATTGGCGCTGGATTGGATGACGATGATGACCAAACCGCCAACGATTACATCGAATTCGAGGATGAGGATATTGATAAGATTTAA 438 0.5114 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVSRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPDSTRLNEGIGAGLDDDDDQTANDYIEFEDEDIDKI. 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05980 145 SUPERFAMILY Nucleic acid-binding proteins 2 144 IPR012340 -
Seca1g05980 145 CDD S1_IF1A 33 109 IPR001253 GO:0003743|GO:0006413
Seca1g05980 145 ProSitePatterns Eukaryotic initiation factor 1A signature. 41 63 IPR018104 GO:0003743|GO:0006413
Seca1g05980 145 FunFam Eukaryotic translation initiation factor 1A 2 145 - -
Seca1g05980 145 SMART eIF1neu4 28 110 IPR001253 GO:0003743|GO:0006413
Seca1g05980 145 Hamap Translation initiation factor 1A [eif1a]. 16 110 IPR001253 GO:0003743|GO:0006413
Seca1g05980 145 Pfam Translation initiation factor 1A / IF-1 32 93 IPR006196 GO:0003723|GO:0003743|GO:0006413
Seca1g05980 145 Gene3D - 2 145 IPR012340 -
Seca1g05980 145 PANTHER EIF-1A 1 145 IPR001253 GO:0003743|GO:0006413
Seca1g05980 145 MobiDBLite consensus disorder prediction 1 25 - -
Seca1g05980 145 ProSiteProfiles S1 domain IF1 type profile. 22 96 IPR006196 GO:0003723|GO:0003743|GO:0006413
Seca1g05980 145 NCBIfam translation initiation factor eIF-1A 14 110 IPR001253 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05980 Seca-Chr1 163133803 163134240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05980 1 145 Eukaryotic Initiation Factors Gene Family AT2G04520 88.966 2.26e-88 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05980 K03236 - gmx:100818207 277.33