Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05969 ATGGACAAATCTCACATGCCTCAATTTTTCACCTCCCAACACCATTGGTATTCATCCACCATTAGTTCCCTCAAAAATGAAAATGACAACCCCTCCATTATGTACTCTTATGACAATGCACTTCATGGTTTCAGTGTTGCCTTGTTACCAGAAGAGTTAGAGATTTTAAAGCAAACCCCAGGTTTCATCTCAGCATATAGTGACAGAGCAGCCATGCTTGACACCACCCAGACTTATGGTTTCCTCTCTCTCAACCATTCCCATGGCCTTTGGCCTGCTTCCAATTATGGTGAAAATGTCATTGTTGGCATCATCGATTCTGGAATTTGGCCAGAGAGTGATAGCTTCAAGGACAATGGCATGATGAATGCTTCAAAAATTCCTTCACGGTGGAAGGGAACATGTGAGGGTGGACAAGAATTTGATCCTTCCCTATGTAACTCCAAACTCATAGGAGCAAGACACTTCAATAAGGGTGTTTTTGCTGCTCAAGGTAATAGCACTAAAATTGGCATGAACTCTGTTAGAGACACAATGGGACATGGAACTCACACTTCCTCTACAGTTGCTGGAAACTATGTAAAGGGTGCATCTTTTTTTGGTTATGCTAAAGGCACAGCCAGAGGAATTGCACCACGTGCAAGGATAGCTATGTACAAGGTTGCATGGCCTGAAGGTATATACGCCTCTGATGTTCTTGCAGGTATGGATCAAGCAATTGCTGATGGGGTGGATGTGATTTCTATCTCAATGGGGTTTGATAGGGTGCCTTTGTATGAGGACCCTGTAGCTATAGCTGCTTTTTCTGCTATGGAGAAAGGTGTGGTAGTTTCAACCTCAGCAGGAAACTCAGGTCCAGCATTAGGGTCCTTACACAATGGGATTCCATGGGTTTTAACAGTTGGAGCAAGCAACACAGAGCGTTCTTTTGGAGGTACTTTAACTCTTGGAAACGGGAAGAGCTATGTGGGGTGGACATTGTTCCCAGCAAGTGCCACAGTAAATGAGCTTGCTCTAGTTTACCATAAGAACATTTCAGCATGTGATTCTCCTAAACTATTATCACAAGTAGCAGGTGGCAGCATTGTTATATGTGATCCTGTTATGGATGTTAAGGAGCAGATTGAACATGTGTCAGAGTCTGAAGTGTATGGAGCTATATTTATCTCCAGTGATCCTAAAGTCTTTGAAATGGGAAGAAGAATGACATGCCCTGGTGTTGTGATTAGTACTAAAGATGGAGAAGGTGTAGTACAATATGCACAAAGGACAAGACACCCTTCAGCTACCATTAAGTTTCAACAAACCATTGTAGGAAAAAAACATGCTCCCACAGTGGCTACTTACAGTTCAAGAGGGCCTTCTTGGGGTTGTCCATCAATATTGAAGCCAGATGTGATGGCACCTGGATCATCAATTCTTGCAGCTTGGATTCCAGATTCACCTGTTGCACAAATTGGCTCAAATGTGTTCTTGAGTAATGAACACAGTTTGTTGACAGGGACTTCCATGGCTTGTCCTCATGCTTCTGGGGTAGTGGCTCTTTTGAAAAATGCACATCCAGAATGGAGTGCTTCTGCTATTAGATCTGCACTCACAACCACAGCCAACTCATTGGATAATACTGGAAAGCCTGTTGAAGAGAATGGTGAGTTTCCTCAACCAGCTTCTCCTCTTGCAATGGGAGCTGGTCAAATTGATCCTAATCGAGCTCTTGATCCAGGTTTGGTTTATGATGCCACACCTCAAGATTATGTCAATCTCCTTTGTGCTATGAATTTTACCAAAAGCCAAATCTTAGCCATTACTAGATCAAGAGGCTATAATTGCTCTAACTCATCATCTTATGACCTCAATTACCCATCTTTCTTAGCTTTCTATGTTAATGAGAGTGTGGCAGTGGAGAGAAAATTCCGGAGAACAGTGACAAACGTTGGAGATGGTCCAGCTGTTTACACTGCCAGGGTGAGCTCTTCAAATGGCACCACAATCACCGTGTCTCCCAATAAGCTGGTTTTCAAGAGAAAATATGAGAAACGAAGCTTCACTTTGACATTGAAGTCTCAAATGGACAAGAAACATGTTGTGGCTTATGGTGCACTCGAATGGGTTCAAGAAAGAGAAAGGCGTATTGTTAGGAGTCCCATTGTGGTGGCACCAATGAACGCTATCTTCAACTCCGAAACTGAAAGTGGGGTTCAGTAG 2205 0.4304 MDKSHMPQFFTSQHHWYSSTISSLKNENDNPSIMYSYDNALHGFSVALLPEELEILKQTPGFISAYSDRAAMLDTTQTYGFLSLNHSHGLWPASNYGENVIVGIIDSGIWPESDSFKDNGMMNASKIPSRWKGTCEGGQEFDPSLCNSKLIGARHFNKGVFAAQGNSTKIGMNSVRDTMGHGTHTSSTVAGNYVKGASFFGYAKGTARGIAPRARIAMYKVAWPEGIYASDVLAGMDQAIADGVDVISISMGFDRVPLYEDPVAIAAFSAMEKGVVVSTSAGNSGPALGSLHNGIPWVLTVGASNTERSFGGTLTLGNGKSYVGWTLFPASATVNELALVYHKNISACDSPKLLSQVAGGSIVICDPVMDVKEQIEHVSESEVYGAIFISSDPKVFEMGRRMTCPGVVISTKDGEGVVQYAQRTRHPSATIKFQQTIVGKKHAPTVATYSSRGPSWGCPSILKPDVMAPGSSILAAWIPDSPVAQIGSNVFLSNEHSLLTGTSMACPHASGVVALLKNAHPEWSASAIRSALTTTANSLDNTGKPVEENGEFPQPASPLAMGAGQIDPNRALDPGLVYDATPQDYVNLLCAMNFTKSQILAITRSRGYNCSNSSSYDLNYPSFLAFYVNESVAVERKFRRTVTNVGDGPAVYTARVSSSNGTTITVSPNKLVFKRKYEKRSFTLTLKSQMDKKHVVAYGALEWVQERERRIVRSPIVVAPMNAIFNSETESGVQ. 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05969 734 CDD PA_subtilisin_like 313 431 - -
Seca1g05969 734 CDD Peptidases_S8_3 73 537 IPR034197 -
Seca1g05969 734 Pfam Subtilase family 97 541 IPR000209 GO:0006508|GO:0008236
Seca1g05969 734 Pfam Fibronectin type-III domain 617 718 IPR041469 -
Seca1g05969 734 Pfam Peptidase inhibitor I9 6 69 IPR010259 -
Seca1g05969 734 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 27 718 IPR045051 -
Seca1g05969 734 Gene3D Peptidase S8/S53 domain 99 585 IPR036852 GO:0004252|GO:0006508
Seca1g05969 734 ProSitePatterns Serine proteases, subtilase family, serine active site. 501 511 IPR023828 -
Seca1g05969 734 PRINTS Subtilisin serine protease family (S8) signature 97 116 IPR015500 -
Seca1g05969 734 PRINTS Subtilisin serine protease family (S8) signature 500 516 IPR015500 -
Seca1g05969 734 PRINTS Subtilisin serine protease family (S8) signature 177 190 IPR015500 -
Seca1g05969 734 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 1 73 IPR037045 -
Seca1g05969 734 SUPERFAMILY Subtilisin-like 76 576 IPR036852 GO:0004252|GO:0006508
Seca1g05969 734 Gene3D - 307 438 - -
Seca1g05969 734 Gene3D - 589 720 - -
Seca1g05969 734 ProSiteProfiles Serine proteases, subtilase domain profile. 78 572 - -
Seca1g05969 734 FunFam Subtilisin-like protease SBT1.9 1 74 - -
Seca1g05969 734 FunFam Subtilisin-like protease SBT1.5 99 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05969 Seca-Chr1 163077230 163079455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05969 1 719 Subtilisin-like Serine Gene Family AT5G67090 42.371 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05969 - - ccaj:109796640 1110.9