LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca1g05965	ATGAGTTGCTTTCCGTGTTTTACCTCTCGGACTAAGAAAACCAATAGCAGGAGGGAGCATGCAGGGGCTGCTGCTGCACCACCACAAGAAAATATTGTAACCAGACCACCCGATATAAAGAAACAAAAAGCAGATGATCAAGTTGACACTTCAAACATTCAATCACAAAATTTCACTTTCCGTGAGTTAGCCAGTGCAACAAAGAATTTCCGCCAAGAGTGTTTGATGGGTGAAGGTGGCTTTGGCAGAGTGTACAAGGGAACAATTCCTGCAACCGGACAGGTGGTAGCAGTGAAGCAACTCGACAGAAATGGGATGCAAGGTGGCAGCAAGGAATTTCTGGTTGAGGTTATGTCACTAAGTCTGTTGAACCATGAAAATCTGGTCAAACTCACTGGTTATTGTGCTGATGGGGATCAACGTCTTTTGGTGTTTGAATTCATGCCGGGGGGCTCTCTAGAAAGCCGTCTTCTTGAGAGGGGACCTGATGATCCTCTGTTAGATTGGTACAACAGAATGAAAATAGCATCTAATGCTGCGAAAGGATTGTGGTACTTGCATGACAAGGCCAATCCCTCAATTATATACAGGGACTTGAAATCAGCAAATATCTTGTTGGATAATGATCTTAATGCAAAACTATCTGATTATGGATTGGCCAAACTTGCTGGTAAAGATAAGGCCAACATTGTACCTACAAGAGTTATGGGTACTTATGGTTATAGTGCTCCAGAGTATGTAAGAACAGGTAACCTCACCTTGAAATCAGATGTCTACAGTTTTGGGGTTGTCTTGCTAGAGCTCATAACTGGACGACGAGCTGTTGACACCACAAGACCACCCGATGAGCAAAATCTAGTTTCATGGGCACAACCCATATTTAGGGACCCAAAAAGATATTCAGATATGGCAGATCCCCAATTGGGAAAAAATTTCCCAGAAAAGGATCTCAATCAAGTTGTTGCAATTGCAGCAATGTGCTTACAGGAGGAAGCAGCAGCACGTCCTTTGATGAGTGATGTTGTAACTGCTCTGAGTTTTCTTTCTACATCTCCTCCACCAGATGCTCCTGCCCCTCTCCCACCTGCCAACTCAGTCTCCCAGAAGAGTGCTGCTGGTGAGAGTGAGAGTGAGAGTGGGAGTGAGAGTGAAAGTGAAAGTGAAGACAGCCATAGTTCTGATGAAGAGGATAGTAAAACTGCTCAAAATCATGTTGCAGCAGGTAGTGCAAAACACCGAGAAGGTGATGATGTTTCAGAAAATGAATGTGATTATTATGAGAATGAAAACCAGCAAGATTATAGTCCAAAAGATGTTAGAGAAACCAAGGAGTTTTACTCCAAATCAAGCCGCAAAAGCAGCTCTAGTTCAGATTCAGAAAATGGACACAAAAAAACCAGTAGGAAAAAGAGTAGCAAAAGAACTACTGGGAAAGAATTAAGCCAGAAAAGCAGTAAGAAAAAGAGCAGTAAAAAAGCTTCTGTAAGAATTTTAAGCCACAAGAAAAGCACAGGCATGGGATCAGAGGATGAAAGCCATTCATCCCAATCCCATAGAAATGTTTCCATAAGCCGTAATAGCAGCAGTGGGGAGTCACAGGATGGAGGAGGTGTTGTCCTAATCAGCAGTGAGAGTGTTCACTACGACCAAGGGAGCAGCAGATATATGGATGTTCATCATTATGAACGTACCAGCATGGGATCCGAGGAGGGAAGTTATCACCATTACCATCATCGTTCCAGCAGCAGGGGATCAGATGTTTGA	1764	0.4331	MSCFPCFTSRTKKTNSRREHAGAAAAPPQENIVTRPPDIKKQKADDQVDTSNIQSQNFTFRELASATKNFRQECLMGEGGFGRVYKGTIPATGQVVAVKQLDRNGMQGGSKEFLVEVMSLSLLNHENLVKLTGYCADGDQRLLVFEFMPGGSLESRLLERGPDDPLLDWYNRMKIASNAAKGLWYLHDKANPSIIYRDLKSANILLDNDLNAKLSDYGLAKLAGKDKANIVPTRVMGTYGYSAPEYVRTGNLTLKSDVYSFGVVLLELITGRRAVDTTRPPDEQNLVSWAQPIFRDPKRYSDMADPQLGKNFPEKDLNQVVAIAAMCLQEEAAARPLMSDVVTALSFLSTSPPPDAPAPLPPANSVSQKSAAGESESESGSESESESEDSHSSDEEDSKTAQNHVAAGSAKHREGDDVSENECDYYENENQQDYSPKDVRETKEFYSKSSRKSSSSSDSENGHKKTSRKKSSKRTTGKELSQKSSKKKSSKKASVRILSHKKSTGMGSEDESHSSQSHRNVSISRNSSSGESQDGGGVVLISSESVHYDQGSSRYMDVHHYERTSMGSEEGSYHHYHHRSSSRGSDV.	588

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca1g05965	587	Pfam	Protein kinase domain	72	342	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca1g05965	587	MobiDBLite	consensus disorder prediction	566	587	-	-
	Seca1g05965	587	FunFam	Serine/threonine-protein kinase PBS1	148	358	-	-
	Seca1g05965	587	ProSiteProfiles	Protein kinase domain profile.	70	348	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca1g05965	587	MobiDBLite	consensus disorder prediction	353	554	-	-
	Seca1g05965	587	MobiDBLite	consensus disorder prediction	363	378	-	-
	Seca1g05965	587	SUPERFAMILY	Protein kinase-like (PK-like)	56	372	IPR011009	-
	Seca1g05965	587	MobiDBLite	consensus disorder prediction	431	448	-	-
	Seca1g05965	587	MobiDBLite	consensus disorder prediction	384	401	-	-
	Seca1g05965	587	SMART	serkin_6	70	348	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca1g05965	587	MobiDBLite	consensus disorder prediction	14	50	-	-
	Seca1g05965	587	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	194	206	IPR008271	GO:0004672\|GO:0006468
	Seca1g05965	587	FunFam	probable serine/threonine-protein kinase RLCKVII	41	147	-	-
	Seca1g05965	587	MobiDBLite	consensus disorder prediction	517	550	-	-
	Seca1g05965	587	CDD	STKc_IRAK	76	345	-	-
	Seca1g05965	587	Gene3D	Phosphorylase Kinase; domain 1	39	147	-	-
	Seca1g05965	587	PANTHER	OS07G0668900 PROTEIN	3	352	-	-
	Seca1g05965	587	Gene3D	Transferase(Phosphotransferase) domain 1	148	352	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca1g05965	Seca-Chr1	163051978	163057681	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca1g05965	1	402	Glycoside Hydrolase	AT3G07070	57.971	1.86e-160	463

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-1	Seca1g05965		Pkinase	6.3e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca1g05965	-		-	gmx:100807682	707.212