Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05964 ATGGGTCGGCACCTTTTGTTTGCATTCTTCATTATTGCAATATTCATAGACTCCACCTCACAAGTATCCCCTGCACCCAATGGCCCTGAAGGTAACTGTGTGTTGAATTCCAACAACACATACCCATATGTGTCATTTGGTGAGTGTGGGGATGTGAAAGAGGACATTAGCAAGTGGGGTGGGGATGGTTTCCCTACCACTCTGTGCTGTCGTAATGCTCTGACTGTTCTGTCATACGCCCTGGCCTTGCAAGTCCGTAACTCAACGGGACAAGTCTTTATTTCCCAAGATCAATGGCAGAGTTGTAGCCAGTTATTTCATCAGCAACATGGGATGTCACCATCTTCATGTGGCTTTGACACCTTGTACTATGGGAGCTCCAAATGTTCAAACTTTGTTTTGCAGGATGTTCGTGGCATACAGGAGTACCAAGATGCATTGAACAAGTGTGAACATTTTGATCGTCCATTTTATCAGTCATGTGCAGATTGTACCAGTGCAATATTGAGTGTGAGAGATAGTTTATATGATCAGATGGGAGACAACAATAATGCAACTGAGAGAGCCATATGTGGAGTAGCAACTCTTGTTGCTGTTGCAGCTGACAAATCTGATGACCCTTCCCTCATTGACAAATTCTTGCGCTGCTTGCCAACCCCAGCAACAGGAAGAAACATGAGATCATTGGCAAAACTTGTGTTTAGTGTGCTGGTAGGTGTCCTTGCAGTATTGCTTCTTGTTTTTCTGGTGAAATGTGTGTCCAAGAAGAAGCCTCGTAAGCGAGCTCACTTGAAAGAGATCACTACCTGGTCTGGACTAAGGTTCTCAAAATCTGAAATTGAGAAGGCATTGAATTATGGCAATGAAAAGATAAGCCTTGGACGTGGGAGTGCAGGCCAAGTGTACAAAGGTGTTCTCCCTAGTGGTCAAGTTGTGGCAATCAAGCATTTGACAAAGAGTAAGAATTCTGATTCTTTCACTAGAGAAGTTGAAGGTCTTTCAAGGCTTCGTCACCCAAACCTGGTTTGTCTATTCGGCTGTTGCATGGAAGATGGTGAGAGATATTTAGTCTATGAATATTGTGCAAATGGAAATCTAGCTCAACATCTCTTGAGTAATGTTCTCTGCCTTTAA 1134 0.4339 MGRHLLFAFFIIAIFIDSTSQVSPAPNGPEGNCVLNSNNTYPYVSFGECGDVKEDISKWGGDGFPTTLCCRNALTVLSYALALQVRNSTGQVFISQDQWQSCSQLFHQQHGMSPSSCGFDTLYYGSSKCSNFVLQDVRGIQEYQDALNKCEHFDRPFYQSCADCTSAILSVRDSLYDQMGDNNNATERAICGVATLVAVAADKSDDPSLIDKFLRCLPTPATGRNMRSLAKLVFSVLVGVLAVLLLVFLVKCVSKKKPRKRAHLKEITTWSGLRFSKSEIEKALNYGNEKISLGRGSAGQVYKGVLPSGQVVAIKHLTKSKNSDSFTREVEGLSRLRHPNLVCLFGCCMEDGERYLVYEYCANGNLAQHLLSNVLCL. 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05964 377 Gene3D Phosphorylase Kinase; domain 1 249 360 - -
Seca1g05964 377 Pfam Protein kinase domain 292 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05964 377 ProSiteProfiles Protein kinase domain profile. 287 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05964 377 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 80 371 - -
Seca1g05964 377 SUPERFAMILY Protein kinase-like (PK-like) 266 374 IPR011009 -
Seca1g05964 377 Pfam SPARK 30 186 IPR043891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05964 Seca-Chr1 163046559 163049539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05964 161 371 Receptor kinase-like Gene Family AT1G11050 31.780 2.91e-21 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Seca1g05964 SPARK 2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05964 - - gmx:100807158 457.218