Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05961 ATGGTGAGTGAGTTGGTGGTAATGGCGAAGAAAGAGGGAGGGGATGCGTCGGAATTGAAGCACAAGTTGTTGGGATTGGTGAAGATTATTGTCGACGGCGATGACTATACGGTGCAAACCACCGATGAGGCTATTGCTACTCTTTCGGCTTTGAAGGATTTGAAATATCGAAATCGAAGGTCTTTCTCTGACAAATTAGAGGACTTTCCCCTTCCTCCTCAATTTCGGTGTCCCATTTCTACCCAGTTGATGACCGACCCTGTTATCTTGTCCACTGGACAGACTTATGATCGGCCATTCATCCAGAGGTGGTTGAATGAAGGCCACAGAACATGCCCTCAAACCCAACAAGTTCTATCTCACTCAATCCTTACTCCTAATTACTTGGTCCGAGACATGATTGCACAATGGTGTAGGGATCATGGAATTGAGCTACCAGAGCCTGTTCGGGACATTGATGAAGTAGTGACTGATGCTGACAGAGGCCATTTAAATTCATTGCTTCATAAGTTGTCATTGTCTCTTTCTGATCAGAAAGAAGCTGCAAAAGAGCTTCGCCTGTTAACAAAGCGAATGCCTTCGTGTCGAACCATTTTTGGGGAGTCCAGTGATTTGATTACTCAGTTGCTCAGTCCATTATCACCTGGCAGGGCTTGTGCTCATCCTGATCTCCAGGAGGACTTGATCACAACTGTTTTAAATCTCTCAATTCATGATGATAATAAAAAAGTGTTTGGAGAAGATCCAACTGTTATTTCTCTGCTTATTGATGCCTTGAAATCTGGAACCATTCAAACAAGAAGCAATGCTGCAGCAGCTATTTTCACATTATCAGCTCTTGATTCCAACAAACACATCATTGGAAAATCTGGAGCTATCAAACATTTGCTTAACCTTTTAGATGAGGGACATCCGTTAGCAGTGAAAGATGCTGCTTCAGCCATATTCAATCTATGTCTTGTGCATGAGAACAAAGGCAGGACTGTGCGAGAAGGGGCTGTTCAGGTTATTCTGAACAAGATCATGGACCAAATTCTAGTTGATGAGTTGTTGGCTATATTGGCACTCCTCTCCTGTCATCCCAGGGCTGTTGAAGAAATGGGTAATCTAGGTGCTGTTCCCCTCTTACTGTGTGCTATAAGAGACAGCACATCAGAACGAAGCAAGGAGAATTGTGTTGCAATCCTATATACAATCTGTTACAGTGATAGAACAAAGTGGAAGGAAATTAGAGAAGAAGAAAAGGCCAACGGTACACTGTCCAAGCTTGCAGAATGTGGAACTTCAAGGGCTAAAAGGAAGGCTAATGGTATTCTTGAGAGGCTCAATAGATCTCCCTCCTTAACCCACACTGCTTAG 1359 0.4341 MVSELVVMAKKEGGDASELKHKLLGLVKIIVDGDDYTVQTTDEAIATLSALKDLKYRNRRSFSDKLEDFPLPPQFRCPISTQLMTDPVILSTGQTYDRPFIQRWLNEGHRTCPQTQQVLSHSILTPNYLVRDMIAQWCRDHGIELPEPVRDIDEVVTDADRGHLNSLLHKLSLSLSDQKEAAKELRLLTKRMPSCRTIFGESSDLITQLLSPLSPGRACAHPDLQEDLITTVLNLSIHDDNKKVFGEDPTVISLLIDALKSGTIQTRSNAAAAIFTLSALDSNKHIIGKSGAIKHLLNLLDEGHPLAVKDAASAIFNLCLVHENKGRTVREGAVQVILNKIMDQILVDELLAILALLSCHPRAVEEMGNLGAVPLLLCAIRDSTSERSKENCVAILYTICYSDRTKWKEIREEEKANGTLSKLAECGTSRAKRKANGILERLNRSPSLTHTA. 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05961 452 SMART arm_5 359 401 IPR000225 GO:0005515
Seca1g05961 452 SMART arm_5 280 320 IPR000225 GO:0005515
Seca1g05961 452 SMART arm_5 238 279 IPR000225 GO:0005515
Seca1g05961 452 SMART Ubox_2 74 137 IPR003613 GO:0004842|GO:0016567
Seca1g05961 452 FunFam RING-type E3 ubiquitin transferase 154 447 - -
Seca1g05961 452 Gene3D - 347 447 IPR011989 -
Seca1g05961 452 ProSiteProfiles U-box domain profile. 70 144 IPR003613 GO:0004842|GO:0016567
Seca1g05961 452 FunFam RING-type E3 ubiquitin transferase 70 144 - -
Seca1g05961 452 SUPERFAMILY RING/U-box 65 148 - -
Seca1g05961 452 Gene3D - 201 346 IPR011989 -
Seca1g05961 452 CDD RING-Ubox_PUB 72 124 IPR045210 -
Seca1g05961 452 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 144 IPR013083 -
Seca1g05961 452 SUPERFAMILY ARM repeat 174 443 IPR016024 -
Seca1g05961 452 Pfam Armadillo/beta-catenin-like repeat 283 319 IPR000225 GO:0005515
Seca1g05961 452 PANTHER U BOX DOMAIN-CONTAINING 36 442 - -
Seca1g05961 452 Pfam U-box domain 72 141 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05961 Seca-Chr1 163025780 163029737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05961 133 452 U-box Gene Family AT3G07360 59.878 3.42e-126 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05961 - - gmx:100806619 680.248