Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05959 ATGGAATCGCAGCGGAGCCCAGGAGCCACGGAAATTAGTGACAAAAAGACCAAACTTTCAGCATTGATAGTGGATGATGATGGTGTGATTCGCTCAATCCACAAGGCCATGCTAGAAGGGTTATTTAAAATTGAGACAAAACTGGCTAAGAATGGAAAGGAAGCAGTGGATCTGCATTGTTCTGGGGCAAATTTTGACATAGTTTTCATGGACAGAGAAATGCCTATCATGGATGGCATTGAGGCAACAAAACAGCTGCGTGCTATGGGTGTGAAGAGCATGATTGTGGGAATAACTACCCGTGCTGATGGTATAGAAGGAGAGGAATTTCTAGCAGCTGGGTTGAACAAATACTTTGGGAAGCCTCTTACCAGTGCAATCATTGAAGCTGTCTTGCAAGATCTTCAAGATTAA 414 0.4348 MESQRSPGATEISDKKTKLSALIVDDDGVIRSIHKAMLEGLFKIETKLAKNGKEAVDLHCSGANFDIVFMDREMPIMDGIEATKQLRAMGVKSMIVGITTRADGIEGEEFLAAGLNKYFGKPLTSAIIEAVLQDLQD. 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05959 137 ProSiteProfiles Response regulatory domain profile. 20 136 IPR001789 GO:0000160
Seca1g05959 137 Pfam Response regulator receiver domain 22 128 IPR001789 GO:0000160
Seca1g05959 137 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 136 - -
Seca1g05959 137 Gene3D - 2 136 - -
Seca1g05959 137 SUPERFAMILY CheY-like 18 135 IPR011006 -
Seca1g05959 137 CDD REC_hyHK_CKI1_RcsC-like 22 132 - -
Seca1g05959 137 SMART REC_2 19 132 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05959 Seca-Chr1 162992509 162993000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05959 3 137 Response Regulator Gene Family AT3G04280 45.390 3.57e-29 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca1g05959 Response_reg 8.2e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05959 - - gmx:102665311 168.703