Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05952 ATGTACTCATTCTTTCTGATTGTGTCACCTTATCTGGTAGCTGTCGTCAACAACCTGTTAAATACCAAAGACCACTTCAGTGTTCCTATCACAACTGCTGAGTTTGCTGTGATGAAGACAGCTTGCAGTTTTGCATTGCCACACATTATGGGTTGGGACCGTCTAACTAATCAGCAGTCCAGAGGGACAGTTGGCCTCCAATCGAAGGCGGACTCACAATTTTTAGACTTGGAATGGGAAAAGTGA 246 0.4431 MYSFFLIVSPYLVAVVNNLLNTKDHFSVPITTAEFAVMKTACSFALPHIMGWDRLTNQQSRGTVGLQSKADSQFLDLEWEK. 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05952 81 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 14 81 IPR013742 GO:0003697|GO:0006355|GO:0006952
Seca1g05952 81 SUPERFAMILY ssDNA-binding transcriptional regulator domain 14 60 IPR009044 GO:0003677|GO:0006355
Seca1g05952 81 Gene3D Transcriptional Coactivator Pc4; Chain A 10 70 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05952 Seca-Chr1 162876779 162878110 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05952 13 81 Whirly Transcription Factor Family AT1G71260 52.000 1.16e-18 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Seca1g05952 Whirly 0.00039 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05952 K26561 - gmx:100527314 117.472