Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05951 ATGTTTAACCTATCTCGCCTGCTACCTTCCACTTCCAGGCATCGGCTATGGGAAACGGTGTCGTCTAGGAAAGCTGATGTTAGAGACTGTCTACGGGATCCGCATGATTTTACCCTTTCAGCTGCCTTTTCTACTGCTAAACAAACATATGCTGCTAAAGGATATGCTTCGGATCGTGTATTTGCTCCTTATTCTGTTTACAAGGGCAAAGCTGCATTCTCATTGAGTCCTTTTCTTCCAACTTTCACTAAGTTGGATACTGGGGCTACTGTAGTTGAGCGACGCGGTTCTATAATGATGGTTTTCATGCATGCTATTGGGGAGCGCAAATATGACTGGGAGAAGAGACAAAGATTTGCTCTCTCAGCAACTGAAGTTGGTTCTTTGATAACCATGGGCCCCCAAGATTCATGTGAATTCTTTCATGACCCCTCAATGTTATCAAGTAATGCTGGTCAAGTAAGGAAGAGCTTATCAATTAAACCTCATGCAAACAGCAATGGCTACTTTGTGTCTTTGAGTAAGATTTTGTTTTGTTAA 540 0.4241 MFNLSRLLPSTSRHRLWETVSSRKADVRDCLRDPHDFTLSAAFSTAKQTYAAKGYASDRVFAPYSVYKGKAAFSLSPFLPTFTKLDTGATVVERRGSIMMVFMHAIGERKYDWEKRQRFALSATEVGSLITMGPQDSCEFFHDPSMLSSNAGQVRKSLSIKPHANSNGYFVSLSKILFC. 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05951 179 Pfam Whirly transcription factor 66 174 IPR013742 GO:0003697|GO:0006355|GO:0006952
Seca1g05951 179 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 29 174 IPR013742 GO:0003697|GO:0006355|GO:0006952
Seca1g05951 179 SUPERFAMILY ssDNA-binding transcriptional regulator domain 57 174 IPR009044 GO:0003677|GO:0006355
Seca1g05951 179 Gene3D Transcriptional Coactivator Pc4; Chain A 50 176 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05951 Seca-Chr1 162874958 162876747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05951 44 174 Whirly Transcription Factor Family AT1G71260 66.917 9.53e-62 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Seca1g05951 Whirly 2.7e-43 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05951 K26561 - gmx:100527314 259.996