Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05949 ATGTTATTTATGCAACAAAGTAGGCGTGAGATGTGCATTCTGTCTGCATCTGGTGCCATCTCTAATGCCTCTCTTCGTCAACCAGCATCCTCAGGAGGCAACATTACATATGAGGGTCGGTTTGAGATTATTTCACTTACTGGTTCCTATGTTCGTAATGAACTTGGAGGTCGAAGTGGTGGTCTCAGTGTATGCTTGTCTAATTCTGATGGACAAATCATAGGTGGTGGAGTTGGTGGGCCCCTTAAAGCTGCTGGTCCAGTTCAGGTCATTGTTGGTACATTTTTTCTTGACACCAAGAAGGATACAGGTGCTGGTGTAAAAGGTGATGCCTCTGCTAGCAAGTTGCCATCACCAGTTGGTGAATCAGTATCAAGTTTAGGTTTCCGCCAAACAGTTGACTGTTCCAGTGGGAATCCAATCCGGGGAAATGATGAGCATCAAGCTATGGGGGGAAGTCATTTCATGATTCAACAGCTTGGTTTGCATGTCACGCCTTCCCGGTCCACAGACTGGGGTGGTCATCCAGACTCAAGAAATGCTGGTTATGATCTGACAGGAAGAACAGGTCATGGGGCACACCAGTCTCCTGAGAATGGGGGCTATGACCAAATTCCTGATTGA 624 0.4679 MLFMQQSRREMCILSASGAISNASLRQPASSGGNITYEGRFEIISLTGSYVRNELGGRSGGLSVCLSNSDGQIIGGGVGGPLKAAGPVQVIVGTFFLDTKKDTGAGVKGDASASKLPSPVGESVSSLGFRQTVDCSSGNPIRGNDEHQAMGGSHFMIQQLGLHVTPSRSTDWGGHPDSRNAGYDLTGRTGHGAHQSPENGGYDQIPD. 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05949 207 MobiDBLite consensus disorder prediction 166 207 - -
Seca1g05949 207 Pfam Plants and Prokaryotes Conserved (PCC) domain 3 95 IPR005175 -
Seca1g05949 207 Gene3D - 1 108 - -
Seca1g05949 207 SUPERFAMILY AF0104/ALDC/Ptd012-like 4 96 - -
Seca1g05949 207 ProSiteProfiles PPC domain profile profile. 1 120 IPR005175 -
Seca1g05949 207 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 131 IPR039605 GO:0003680
Seca1g05949 207 CDD DUF296 3 95 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05949 Seca-Chr1 162862421 162867610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05949 1 207 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 54.867 1.01e-65 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05949 - - gmx:100809675 360.147