Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05948 ATGGAAAGAAGGTTGCCTCCTTTGTTGTTGTTGTTCTTGCTGTTGGTTTGTTCTCTGTTGCTCTCTGTTTCTGGTGTCGATGTGGATTGCAACTGTGATGAGGAAGGGCTATGGAGCATACAGAGCATCTTGGTTTGCCAAAAAGTCAGTGACTTTTTCATTGCCATTGCATATTTTTCCATACCCCTTGAGCTCCTTTACTTTGTTAGCTACTCCAACGTCCCATTCAAATTGGTCTTTCTTCAGTTTACTGCTTTCATAGTCCTTTGTGGCTTGACCCATTTGCTCAATGCCTATACTTACTACGGGCCTCACTCCTTCCAGTTGTTTCTGTCTCTCACTGTTGCTAAATTCCTTACTGCTCTTGTTTCCTGTGCCACTGCAATTACCTTTCCCACCCTGATTCCTCTTCTTCTGAAAATCAAAGTGAGGGAGCTCTTCTTGAGGCAGAATGTGTTGGAATTGGGGCAAGAGGTTGGGATGATGAAGAAACAAAAGGAAACGAGCTGGCATGTTAGGATGCTGACCCGTGAGATTAGGAAATCTCTGGATAAGCATACCATCCTGTATACCACCCTTGTTGAGCTTTCCAAGGCCTTGGGCTTGCATAATTGTGCAGTTTGGATGCCTGATGAGGACAGGCGAGTAATGCATTTGACTCATGAGTTGAAACCAAGCTCAACAAAGAATTTTCACAGTTCTATTCCTGTGAACGATCCAGATGTATTAGAGATAAGAAAGAGCAAGGGGGTGCGGATTTTGGGGCCTGATTCTGCACTAGGAACTGCAAGTAGTGGTGAATCTGGGGACTCGGGTGCTGTAGCAGCCATTCGCATGCCGATACTTCATGTTTCAAATTTCAAAGGGGGCACACCAGAGTTGGTTGAGACATCTTATGCTATACTGGTTTTGGTTCTTCCAAATTCAAACTCCAGGGCTTGGACCTCCCATGAGATGGAGATAGTGGAAGTAGTTGCTGACCAGGTGGCTGTTGCCTTGTCTCATGCGTCTGTTCTTGAGGAGTCTCAGCTAATGAGTCAGAAACTTGCAGAGCAAAACCGAGCATTGCAACAGGCTCAAAAGAATGCAATGATGGCCAGCCAGGCAAGGAGCTCATTTGAGAAAGTGATGAGTCATGGAATGCGGAGACCTATGCATTCAATCCTGGGCTTGCTTTCAATGTTTCAAGAGGATAATATAAGACCTGAGCAGAAGATTGTTATTGACACAATGTTGAAAGTTAGCAATGCACTCTCACATTTGATTAATGATGTAATGGAGATTGCAGCAAATGACAAAGGAAGCTTCCGGTTAGAGATGAAACCTTTCAATCTACATTCCGTGTTGAGGGAAGCTTCTTGCATTGCCAAGTGTTTGTGTGTATATAAAGGCTTTGGTCTTGAAATTGATGTCCTTAGGTCTTTGCCTGATCTGGTAATAGGTGACGAGGCAAGATCTTTTCAAGTAATTTTGCATATGATTGGCTATTTGTTGAACATATATGATAGAGGGACTCTCATTTTTCGAGTTTTTCTTGAAAGTCATAGTGGGGATAAGGATGATAAAAATGTTGGAATATGGAGATCAAGCATGCAAAATGAATATGTACATATAAAATTTAGTTTCCAGTTAACTGGTAATAGTTCCCATTCAGATGAATCAATTTTAACAAGAAATTATGCTGGCAAGAGGCACAGCTGCAACGAACCTAAGGAGGGCCTGAGCTTTGGAATGTGCAAAACACTTGTGCAGCACACAATGTGGAATAATATGCAGATGATGCAAGGTAATATCTGGATATCAACAAACTCTCTAGGTTTGGCACAAGGGATGACACTTCTTCTCAAGTTTCAGATAGGATCATCACATGGAAGATTCGGTCTTGCTCCTAAAGATTTTACAAACACACAGTTTAGAGGGCTTAAGGTGGTGTTAGCCGATGATGATGATATAAACAGGACTGTGACTAAGAAGCTGCTTGAGAAGCTGGGTTGCCAAGTAACTGCTGTTTCATCGGGTTTCGAATGTCTGGGAGCTATCACTGCCTCTGGTAACTCATTCAAAATTATCCTATTGGATCTTCACATGCCTGAAATGGATGGTTTTGAAGTTGCAAGAAGGATTCGGAAGTTCCAAAGCCGTAGTTGGCCCTTGATTATTGCTCTTACAGCAAGTGCAGAAGAACACATAAAGGAAAGATGCCTGCAGGTGGGGATGAATGGATTGATTCGAAAACCGATCCTCCTCCATGAGATAGCGGATGAACTTAGAACAGTCCTGCTACGTGCAGGTGAAAAATTATGA 2304 0.4271 MERRLPPLLLLFLLLVCSLLLSVSGVDVDCNCDEEGLWSIQSILVCQKVSDFFIAIAYFSIPLELLYFVSYSNVPFKLVFLQFTAFIVLCGLTHLLNAYTYYGPHSFQLFLSLTVAKFLTALVSCATAITFPTLIPLLLKIKVRELFLRQNVLELGQEVGMMKKQKETSWHVRMLTREIRKSLDKHTILYTTLVELSKALGLHNCAVWMPDEDRRVMHLTHELKPSSTKNFHSSIPVNDPDVLEIRKSKGVRILGPDSALGTASSGESGDSGAVAAIRMPILHVSNFKGGTPELVETSYAILVLVLPNSNSRAWTSHEMEIVEVVADQVAVALSHASVLEESQLMSQKLAEQNRALQQAQKNAMMASQARSSFEKVMSHGMRRPMHSILGLLSMFQEDNIRPEQKIVIDTMLKVSNALSHLINDVMEIAANDKGSFRLEMKPFNLHSVLREASCIAKCLCVYKGFGLEIDVLRSLPDLVIGDEARSFQVILHMIGYLLNIYDRGTLIFRVFLESHSGDKDDKNVGIWRSSMQNEYVHIKFSFQLTGNSSHSDESILTRNYAGKRHSCNEPKEGLSFGMCKTLVQHTMWNNMQMMQGNIWISTNSLGLAQGMTLLLKFQIGSSHGRFGLAPKDFTNTQFRGLKVVLADDDDINRTVTKKLLEKLGCQVTAVSSGFECLGAITASGNSFKIILLDLHMPEMDGFEVARRIRKFQSRSWPLIIALTASAEEHIKERCLQVGMNGLIRKPILLHEIADELRTVLLRAGEKL. 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05948 767 Gene3D - 433 621 IPR036890 -
Seca1g05948 767 CDD REC_ETR-like 641 756 - -
Seca1g05948 767 FunFam Ethylene receptor 4 336 430 - -
Seca1g05948 767 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 354 434 IPR036097 GO:0000155|GO:0007165
Seca1g05948 767 PIRSF Ethylen_sen_hybr_HK 3 767 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Seca1g05948 767 Gene3D - 161 334 IPR029016 -
Seca1g05948 767 SMART REC_2 641 756 IPR001789 GO:0000160
Seca1g05948 767 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 28 763 - -
Seca1g05948 767 FunFam Ethylene receptor 639 763 - -
Seca1g05948 767 Pfam Response regulator receiver domain 643 755 IPR001789 GO:0000160
Seca1g05948 767 SUPERFAMILY CheY-like 637 760 IPR011006 -
Seca1g05948 767 Pfam His Kinase A (phospho-acceptor) domain 370 433 IPR003661 GO:0000155|GO:0007165
Seca1g05948 767 Pfam GAF domain 186 333 IPR003018 GO:0005515
Seca1g05948 767 ProSiteProfiles Histidine kinase domain profile. 376 621 IPR005467 -
Seca1g05948 767 Coils Coil 339 369 - -
Seca1g05948 767 ProSiteProfiles Response regulatory domain profile. 642 760 IPR001789 GO:0000160
Seca1g05948 767 SMART gaf_1 184 343 IPR003018 GO:0005515
Seca1g05948 767 SUPERFAMILY GAF domain-like 187 336 - -
Seca1g05948 767 Gene3D - 641 766 - -
Seca1g05948 767 CDD HisKA 367 429 IPR003661 GO:0000155|GO:0007165
Seca1g05948 767 Gene3D - 335 432 - -
Seca1g05948 767 SMART HisKA_10 369 434 IPR003661 GO:0000155|GO:0007165
Seca1g05948 767 CDD HATPase_ETR2_ERS2-EIN4-like 475 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05948 Seca-Chr1 162854355 162858170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05948 28 765 Miscellaneous Gene Families AT3G04580 60.985 0.0 900
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca1g05948 GAF 4.8e-13 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05948 K14509 - gmx:100805023 1285.4