Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05947 ATGGCCAACCCATGGTGGAGCGACCCAGTGGGTCTCTCTGGAATGGACAACAACCCATCTCCCATGAAAAAACCCGATCTGGGTTTCTCCATGAACGACAGTACCCATAAAGACCATCAGGAGAAAGAAAACAGCGAGGAGGCCAAAGAAGGAGCTACCGAGACGGGCCCCATGCGCCGGGCCAGGGGCCGCCCACCGGGCTCAAAGAACAAGCCCAAACCGCCTGTATTTGTGACCAGAGACGGCCCAAATGCACTTCGAAGCCACGTCATGGAGATAGCAAACGGAGCAGACATCGCCGATAGCTTGATTCAGTTCGCGAGAAGGCGTCAAAGAGGTGTCTGCGTCCTCAGCGGCACCGGAACCGTCACCAACGTCACTCTCCGGCAGCCCTCGTCTCCCGGAGCTGTGATGGCACTTCAAGGCCGCTTCGAGATAATATCGTTGACCGGTTCGTTCCTGCCCGGAGCTTCACCGCCGGGATCGACAGGTCTAACGGTTTACATGGCGGGAGGTCAGGGACAAGTGGTGGGCGGTGGGGTGGTGGGCCCGCTGGTAGCATCAGGAGCGGTTATGATAATGGCGGCTACATTTTCCAATGCTGTGTATGAGCGGTTACCGTTAGCGATTGAGGAGGATGAAGATGGGGGACACGGAGATCAAGGTGAGGGTTCGTCTTCAATTATTCCTGCACCGTATAATAATTTGGTTCCTCCTCCTCATCCACAGTTGAACAACCATGAAGCTTATTCTTCTCCTTTTTCTAATGCTCATCCCAGGCTGAGGTCACCTTATTGA 798 0.5489 MANPWWSDPVGLSGMDNNPSPMKKPDLGFSMNDSTHKDHQEKENSEEAKEGATETGPMRRARGRPPGSKNKPKPPVFVTRDGPNALRSHVMEIANGADIADSLIQFARRRQRGVCVLSGTGTVTNVTLRQPSSPGAVMALQGRFEIISLTGSFLPGASPPGSTGLTVYMAGGQGQVVGGGVVGPLVASGAVMIMAATFSNAVYERLPLAIEEDEDGGHGDQGEGSSSIIPAPYNNLVPPPHPQLNNHEAYSSPFSNAHPRLRSPY. 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05947 265 SUPERFAMILY AF0104/ALDC/Ptd012-like 84 208 - -
Seca1g05947 265 MobiDBLite consensus disorder prediction 212 265 - -
Seca1g05947 265 FunFam AT-hook motif nuclear-localized protein 86 215 - -
Seca1g05947 265 MobiDBLite consensus disorder prediction 30 57 - -
Seca1g05947 265 Pfam Plants and Prokaryotes Conserved (PCC) domain 87 200 IPR005175 -
Seca1g05947 265 CDD DUF296 87 170 IPR005175 -
Seca1g05947 265 ProSiteProfiles PPC domain profile profile. 83 224 IPR005175 -
Seca1g05947 265 MobiDBLite consensus disorder prediction 1 82 - -
Seca1g05947 265 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 34 221 IPR014476 GO:0003680
Seca1g05947 265 Gene3D - 86 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05947 Seca-Chr1 162840869 162841666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05947 1 236 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 59.677 4.45e-84 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05947 - - aprc:113873404 316.235