Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05946 ATGAAGATGTCAAATCCGAAAGTTTTCTTTGATATTGTAATTGGAAAGATGAAGGCTGGGCGAGTAGTAATGGAACTGTTTGCTGATGTCACCCCAAAAACAGCTGAAAACTTCAGGGCTCTATGCACTGGGGAAAAGGGGATTGGAAATTCTGGGAAACTTTTACACTACAAAGGATCCTCATTTCATCGTATTATTCCAGAGTTTATGTGTCAGGGAGGAGATTTTACCAGAGGGAATGGGACAGGAGGAGAGTCAATTTACGGGGCCAAATTTGCAGATGAGAATTTCAAGCTGAAGCATACTGGCCCTGGTATTCTTTCCATGGCAAATGCTGGACCCAATACAAATGGTTCCCAGTTCTTTATATGTACTACAAAGACTGAATGGCTTGATGGTAAACATGTTGTGTTTGGTAAAGTTGTTGATGGATATAGTGTAGTGAAGGAGATGGAGAAGGTGGGTTCAGGAAGTGGCAGGACTTTGGAACCAGTAATAATTGAAGATTGTGGGCAGATAGCAGAGAACTGA 531 0.4181 MKMSNPKVFFDIVIGKMKAGRVVMELFADVTPKTAENFRALCTGEKGIGNSGKLLHYKGSSFHRIIPEFMCQGGDFTRGNGTGGESIYGAKFADENFKLKHTGPGILSMANAGPNTNGSQFFICTTKTEWLDGKHVVFGKVVDGYSVVKEMEKVGSGSGRTLEPVIIEDCGQIAEN. 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05946 176 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 9 172 IPR002130 GO:0000413|GO:0003755
Seca1g05946 176 CDD cyclophilin_ABH_like 6 171 - -
Seca1g05946 176 FunFam Peptidyl-prolyl cis-trans isomerase 1 174 - -
Seca1g05946 176 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 14 171 IPR002130 GO:0000413|GO:0003755
Seca1g05946 176 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 57 74 IPR020892 GO:0003755|GO:0006457
Seca1g05946 176 PIRSF Peptidylpro_ismrse 1 176 IPR024936 GO:0003755
Seca1g05946 176 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 7 173 - -
Seca1g05946 176 SUPERFAMILY Cyclophilin-like 3 173 IPR029000 -
Seca1g05946 176 Gene3D - 1 176 IPR029000 -
Seca1g05946 176 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 26 41 IPR002130 GO:0000413|GO:0003755
Seca1g05946 176 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 62 74 IPR002130 GO:0000413|GO:0003755
Seca1g05946 176 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 120 132 IPR002130 GO:0000413|GO:0003755
Seca1g05946 176 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 105 120 IPR002130 GO:0000413|GO:0003755
Seca1g05946 176 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 133 148 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05946 Seca-Chr1 162834951 162836669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05946 20 168 U-box Gene Family AT5G67530 48.684 1.62e-32 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05946 K01802 - vvi:100261571 323.553