Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05943 ATGGATTCCTCATTCTTTGTTCCACACTCATCAAATTTTGAATTCCCTTCTGAGTCCTGTCCTAATTACCAATCCCTTCCCTTCAATGAAAATGACTCTGAGGAAATGTTTCTTTATGAAGTTCTGTCACAGGCTGGTGCAGAGTCCTTTGAAAACACAGCATCGGTATCTCATTCAAGAGAAGAAGAGGTGAGTTCCAAGGAAGAGGTTTCTTACAGAGGGGTTCGAAGGAGGCCATGGGGGAAGTATGCTGCAGAGATAAGAGACTCAACGAGGAATGGTGCCAGGGTTTGGTTGGGAACCTTTGACACTGCTGAGGCTGCTGCTTTGGCTTATGATCAAGCTGCATTAGCAATGAGAGGCTCAATGGCTGTGTTGAATTTCCCACCTGAGATGGTTCAACAATCACTTCAAAACATGGACTGTGGTGCTTTTCGAGAAGGGTGTTCTCCTGTTTTGGAGTTAAAGAAGAGACACTCCATTAAGAGGAAATCGGAGAGCAAGAAGTTGAGAAAGAAGCATGATGAAGAGGTGAGGTCAGAAAACAGGGTGGTGTTGGAGGATTTAGGGGCAGAGTATCTAGAACAGCTTCTTACTTTGTCCCAGGAAGATGCTTGCTAG 621 0.4493 MDSSFFVPHSSNFEFPSESCPNYQSLPFNENDSEEMFLYEVLSQAGAESFENTASVSHSREEEVSSKEEVSYRGVRRRPWGKYAAEIRDSTRNGARVWLGTFDTAEAAALAYDQAALAMRGSMAVLNFPPEMVQQSLQNMDCGAFREGCSPVLELKKRHSIKRKSESKKLRKKHDEEVRSENRVVLEDLGAEYLEQLLTLSQEDAC. 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05943 206 MobiDBLite consensus disorder prediction 55 70 - -
Seca1g05943 206 Pfam AP2 domain 72 121 IPR001471 GO:0003700|GO:0006355
Seca1g05943 206 Gene3D AP2/ERF domain 71 130 IPR036955 GO:0003700|GO:0006355
Seca1g05943 206 SUPERFAMILY DNA-binding domain 72 130 IPR016177 GO:0003677
Seca1g05943 206 ProSiteProfiles AP2/ERF domain profile. 71 129 IPR001471 GO:0003700|GO:0006355
Seca1g05943 206 FunFam Ethylene-responsive transcription factor 2 70 131 - -
Seca1g05943 206 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Seca1g05943 206 PRINTS Ethylene responsive element binding protein signature 95 111 IPR001471 GO:0003700|GO:0006355
Seca1g05943 206 CDD AP2 72 129 IPR001471 GO:0003700|GO:0006355
Seca1g05943 206 PANTHER DNA-BINDING DOMAIN 52 199 IPR044808 GO:0003700|GO:0009873
Seca1g05943 206 MobiDBLite consensus disorder prediction 50 70 - -
Seca1g05943 206 SMART rav1_2 71 135 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05943 Seca-Chr1 162813451 162814071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05943 26 202 AP2-EREBP Transcription Factor Family AT3G23240 55.307 2.90e-64 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca1g05943 AP2 3.1e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05943 K14516 - qsu:112003251 223.402