Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05941 ATGTGTGAAGAAGCTCTGAGGAAGAAACAATACCAAGTGTTGGAGGAAGTGGGGCGTGGCAGATTCGGCACTGTGTTCCGTTGCTTCCACCCAATTTCAAACCAATTCTATGCTTGCAAAGTCATCGACAAGACCCTCCTCACCGATTCCATTGATCGTCAATGCCTAGAAAACGAGTCCAAATTCATCACCTATCTCTCTCCACATCCCAATATTCTTCAAACCTTCGACGCCTTCGAAGACGCAGATTTCTCTACCATCGTCTTCGACCTCTGTGACCCTCTCACCCTCTTTGACCGCATCGCCGATCGTCCCTTGCCGGAGCCACAATCCGCTTCCATCATGAAGCAGCTTCTAGAAGCTCTTGCACATTGCCACAGGCTCGGAATAGCGCACAGAGACATAAAGCCTGATAACCTGTTGTTTGATTCGAGGGATAACCTTAAAGTCGCCGACTTTGGTTCGGCGGAGTGGTTCGGCGACGGAAGGAGCATGAGTGGGGTGGTGGGTACGCCGTATTATGTGGCGCCGGAGGTTTTGATGGGGAGAGAGTATAATGAGAAAGTGGATGTTTGGAGTAGTGGTGTGATTCTTTACACAATGTTGGCTGGGATTCCACCTTTTTATGGAGACTCTGCTGCAGATACTTTTGAGGCTGTGGTGAGGGCTAATCTCAGGTTTCCAACAAGGATTTTCAGGTCTGTGTCTTCCTCTGCTAAGGATCTCATCAGGAAGATGATTTGTAGGGATCCCTCTAGGAGAATATCAGCAGAGCAAGCCTTGAGACACCCATGGATATTGAGTGGTGGTGTGACTAGTGATCTAAATTGA 831 0.4862 MCEEALRKKQYQVLEEVGRGRFGTVFRCFHPISNQFYACKVIDKTLLTDSIDRQCLENESKFITYLSPHPNILQTFDAFEDADFSTIVFDLCDPLTLFDRIADRPLPEPQSASIMKQLLEALAHCHRLGIAHRDIKPDNLLFDSRDNLKVADFGSAEWFGDGRSMSGVVGTPYYVAPEVLMGREYNEKVDVWSSGVILYTMLAGIPPFYGDSAADTFEAVVRANLRFPTRIFRSVSSSAKDLIRKMICRDPSRRISAEQALRHPWILSGGVTSDLN. 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05941 276 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Seca1g05941 276 ProSiteProfiles Protein kinase domain profile. 11 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05941 276 SUPERFAMILY Protein kinase-like (PK-like) 7 268 IPR011009 -
Seca1g05941 276 Gene3D Phosphorylase Kinase; domain 1 1 92 - -
Seca1g05941 276 FunFam Phosphoenolpyruvate carboxylase kinase 2 3 276 - -
Seca1g05941 276 SMART serkin_6 11 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05941 276 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524
Seca1g05941 276 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 268 - -
Seca1g05941 276 Gene3D Transferase(Phosphotransferase) domain 1 96 274 - -
Seca1g05941 276 CDD STKc_CAMK 10 265 - -
Seca1g05941 276 Pfam Protein kinase domain 11 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05941 Seca-Chr1 162790170 162791476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05941 11 274 EF-hand Containing Proteins AT1G50700 39.552 2.17e-72 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca1g05941 Pkinase 1.2e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05941 - K08794 gmx:548089 439.113