Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05933 ATGAGGATTATGATAAAGGGCGGTGTTTGGAAAAACACCGAAGATGAAATCCTGAAAGCTGCTGTTATGAAATATGGTAAAAACCAGTGGGCTCGAATCTCATCGCTTCTTGTTCGCAAATCTGCCAAGCAGTGCAAGGCTCGTTGGTATGAGTGGCTCGATCCTTCCATTAAAAAGACTGAGTGGACAAGAGAAGAGGATGAGAAACTACTTCATCTTGCCAAGCTTATGCCCACACAATGGAGAACAATAGCTCCAATTGTTGGCCGTACCCCTTCCCAGTGCCTTGAACGTTACGAGAAACTCCTTGATGCAGCCTGTGTAAAGGATGAGAATTATGAACCAGGTGATGACCCCCGGAAATTGCGTCCTGGGGAAATTGATCCAAATCCTGAGTCAAAGCCTGCACGCCCTGATCCTGTTGATATGGACGAGGATGAGAAGGAGATGCTTTCTGAAGCTAGAGCTCGGTTAGCCAACACCAAAGGCAAAAAGGCCAAAAGGAAAGCCAGGGAGAAACAACTTGAGGAAGCCAGGAGGCTTGCTTCTTTACAAAAAAAGAGGGAACTGAAGGCTGCTGGAATTGACATCAGGCATCGGAGGAGGAAAAGGAAAGGAATAGACTACAATGCAGAAATTCCCTTTGAGAAGAGGCCTCCTCCAGGGCTTTTTGATGTTGCTGATGAAGATAGACCAGTGGAACAGCCCAAGTTCCCTACTACAATTGAAGAACTTGAGGGAAAAAGAAGGGTTGATGTTGAAGCACATCTCAGAAAGCAAGACGCTGCAAAGAATAAAATTGCACAAAGGCAAGATGCTCCATCTGCTATTCTGCATGCCAACAAGCTGAATGATCCTGAAACAGTTAGAAAAAGATCTAAATTGATGCTTCCACCACCCCAGATATCTGACCATGAATTGGATGAAATTGCAAGGTTGGGTTATGCCACTGACCTTGCAGGCAGTGAAGAACTCACAGAGGGTAGTAGTGCTACTCGTGCTCTTCTAGCTAATTATGCACAGACACCCAGCCAAGGAATGACACCTTTAAGAACTCCTCAGAGAACACCGGCTGGTAAAGGAGATGCTATCATGATGGAAGCTGAAAATCTGGCCAGGTTGAGGGAGTCTCAGACACCATTGTTAGGAGGAGAGAACCCAGAATTGCATCCTTCAGATTTTTCTGGGGTCACTCCTAAGAAAAAGGAAATTCAAACTCCAAATCCAATGCTGACTCCCTCTGCAACTCCTGGAGGTACTCCTGGAGGTGCAGGCCTTACTCCCAGGAGTGGTATGACACCAGCAAGGGAAGGTTTTTCTTTTGGCATAACTCCAAAGGGGACTCCTCTCAGGGATGAGCTACATATTAATGAAGACATGGATATGCATGACAATGCTAAGCTTGAGCTACGGAGACAAGCTGATATGAAAAGAAGTTTGCGCTCTGGTTTAAGCAGTCTTCCACAGCCTAAAAATGAGTACCAGATAGTGATGCAACCAGTTCCAGAAGATGCTGAAGAACCTGAGGAGAAGATTGAAGAGGATATGTCTGACAGAATAGCTAGAGAAAAAGCAGAAGAAGAGGCTCGACAGCAGGCATTACTAAGAAAACGATCAAAAGTCCTTCAAAGGGGACTTCCTAGGCCTCCTGCTACATCTTTGGAGCTTATTAGAAACTCCTTGATAAGAGCTGATGGGGACAAGAGTTCATTTGTTCCACCAACCTCTATTGAGCAAGCTGATGAGATGATAAGAAAGGAGCTCCTAACCTTACTGGAGCATGACAATGCCAAGTATCCACTTGATGAGGTAGTGAATAAGGATAAAAAAAAAGGAGCCAAGCGTGTAGCAAATGGGCCTGCTGTCCCTGTGATAGAAGATTTCCAGGATGATGAGATGAAAGATGCTGATCAGTTGATAAAGGATGAAGCCCAGTATCTCCGTGTGGCAATGGGGCATGAAAGTGATTCCCTTGATGATTTTGTTGAAGCACATACAACTTGCATTAATGATTTAATGTACTTTGCCACCCGTAATGCCTATGGTCTATCTAGTGTTGCTGGAAACATGGAGAAGCTAGCAGCTTTGCAGGGTGAATTTGAGGATGTGAGAAGCAAGTTGGATGATGGTAAGGAGAAGATGGTACGTCTTGAGAAGAAGGTTACAGTACTCTCGCAAGGCTATGAGATGAGAGCAAAAAAAAGTCTTTGGCCACAAATTGAAGCAACTTTCAAGCAGATGGACATAGCTGCAACAGAATCGGAATGTTTTCAAGCTTTACAAAAGCAGGAACAATTAGCAGCATCACACAGGATAAATAATCTTTGGACTGAAGTACAGAAGCAAAAGGAACTTGAGAAAACTTTACAAAAGAGATATGGGGATCTTATAGCAGAGATTGAAAGGTTACAAAATGTCATGAACCAGTTACGGGCACAAGCACAACAGCAAGAAGAAATTGAAGCAAAGAATCGTGCACTTGAGCTTACTGAAGCCACAGCTGATCAAATTAATGTGCAGGGTTCAGAGAATAATGAAGCCGTACCCCTCTCAGCTGACCAGCAAGTAGACATTGTGCAAGATCAGGCCACTTCTAGCTCCAAAAATGATATGGATGTGGATTCTTGTAAAGAGGAAACAACACACAACACTGATATTAAATTGCCAGATGCACCTGCTGCTGAGGATGAGAGTGCAAACGTGGCAGAAGGTAAAAACACTGGCAGTGATATTGACAACAAAGAAACCACACTAGATGTGAGTGCTGCAGTGGAAATAAGTAGTATTGAGGGAAATGGGGAAGAGGATCGAAATGTTGAGAATCCAGATGAGGTTGTAGAAGCTGTAAACAAACCTGATAATAGCTTAAGAGAAAGCAACCCCCTTGATGAGGGGGATAACATGCAATTTGCTGATGGCAAAGGAGAGGAGGTAAATTAG 2940 0.4398 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDIRHRRRKRKGIDYNAEIPFEKRPPPGLFDVADEDRPVEQPKFPTTIEELEGKRRVDVEAHLRKQDAAKNKIAQRQDAPSAILHANKLNDPETVRKRSKLMLPPPQISDHELDEIARLGYATDLAGSEELTEGSSATRALLANYAQTPSQGMTPLRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPKKKEIQTPNPMLTPSATPGGTPGGAGLTPRSGMTPAREGFSFGITPKGTPLRDELHINEDMDMHDNAKLELRRQADMKRSLRSGLSSLPQPKNEYQIVMQPVPEDAEEPEEKIEEDMSDRIAREKAEEEARQQALLRKRSKVLQRGLPRPPATSLELIRNSLIRADGDKSSFVPPTSIEQADEMIRKELLTLLEHDNAKYPLDEVVNKDKKKGAKRVANGPAVPVIEDFQDDEMKDADQLIKDEAQYLRVAMGHESDSLDDFVEAHTTCINDLMYFATRNAYGLSSVAGNMEKLAALQGEFEDVRSKLDDGKEKMVRLEKKVTVLSQGYEMRAKKSLWPQIEATFKQMDIAATESECFQALQKQEQLAASHRINNLWTEVQKQKELEKTLQKRYGDLIAEIERLQNVMNQLRAQAQQQEEIEAKNRALELTEATADQINVQGSENNEAVPLSADQQVDIVQDQATSSSKNDMDVDSCKEETTHNTDIKLPDAPAAEDESANVAEGKNTGSDIDNKETTLDVSAAVEISSIEGNGEEDRNVENPDEVVEAVNKPDNSLRESNPLDEGDNMQFADGKGEEVN. 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05933 979 MobiDBLite consensus disorder prediction 399 415 - -
Seca1g05933 979 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Seca1g05933 979 MobiDBLite consensus disorder prediction 902 919 - -
Seca1g05933 979 Coils Coil 167 187 - -
Seca1g05933 979 SMART sant 58 105 IPR001005 -
Seca1g05933 979 SMART sant 6 55 IPR001005 -
Seca1g05933 979 MobiDBLite consensus disorder prediction 861 919 - -
Seca1g05933 979 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Seca1g05933 979 FunFam CDC5 cell division cycle 5-like 60 120 - -
Seca1g05933 979 Gene3D - 60 114 - -
Seca1g05933 979 Coils Coil 693 720 - -
Seca1g05933 979 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Seca1g05933 979 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Seca1g05933 979 Pfam pre-mRNA splicing factor component 406 658 IPR021786 -
Seca1g05933 979 Coils Coil 786 833 - -
Seca1g05933 979 MobiDBLite consensus disorder prediction 380 424 - -
Seca1g05933 979 FunFam CDC5 cell division cycle 5-like 5 59 - -
Seca1g05933 979 Gene3D - 5 59 - -
Seca1g05933 979 CDD SANT_CDC5_II 55 106 IPR047240 -
Seca1g05933 979 MobiDBLite consensus disorder prediction 113 149 - -
Seca1g05933 979 Pfam Myb-like DNA-binding domain 10 70 - -
Seca1g05933 979 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 807 IPR047242 GO:0000398|GO:0000974
Seca1g05933 979 CDD SANT 10 53 IPR001005 -
Seca1g05933 979 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Seca1g05933 979 MobiDBLite consensus disorder prediction 949 979 - -
Seca1g05933 979 MobiDBLite consensus disorder prediction 871 892 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05933 Seca-Chr1 162693179 162698490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05933 1 839 MYB-Related Transcription Factor Family AT1G09770 75.682 0.0 1246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca1g05933 Myb_Cef 9.5e-63 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05933 K12860 - gmx:100801352 1469.91