Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05930 ATGGCTAAGACACCTTGTTGTGAGAGGATGGGATTGAAGAAGGGACCTTGGACTGCTGAAGAAGATCAGATTTTGATTTCTCATATTCAACAATACGGCCATGGAAACTGGCGTGCGCTTCCTAAGCAAGCTGGTTTGTTAAGGTGTGGCAAGAGTTGTAGGCTTCGTTGGATAAATTACTTGAGGCCAGATATTAAGCGAGGGAAATTCAGCGAGGAAGAAGAAGATACCATCCTTAAGTTACATGAAGTTCTTGGGAATAGATGGTCTGCTATTGCGGCAAGATTACCAGGACGAACTGATAATGAAATAAAGAATTTTTGGCATACTCATTTGAAGAAGAAGGTGGAGAAAAGTGCAGTGCACAATGTCAATACCTTGCAAGGGGCACAAGCACATAGTCTATTTAGCATGCCACGAGTAGCCGCTGATGCATCAAGTGATGGTTCTGGTGTTGGTGGAAAAGTAGTGATTGCTAATTATGGTTCACCCTCTAGGAAGAATCCACCTATTGTAGGTTCTGGATTTTACAGTGCAGTCTCTTCTGATACTTCTTCAGGCGAAACCATGGGGAATCATGGTTCCAGTCAGCTCAGTGAAGAAATGGAATTTTGGTACAATATATTCATCAAAACAGGGCAGACATCATGA 651 0.4255 MAKTPCCERMGLKKGPWTAEEDQILISHIQQYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGKFSEEEEDTILKLHEVLGNRWSAIAARLPGRTDNEIKNFWHTHLKKKVEKSAVHNVNTLQGAQAHSLFSMPRVAADASSDGSGVGGKVVIANYGSPSRKNPPIVGSGFYSAVSSDTSSGETMGNHGSSQLSEEMEFWYNIFIKTGQTS. 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05930 216 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Seca1g05930 216 CDD SANT 69 112 IPR001005 -
Seca1g05930 216 CDD SANT 16 61 IPR001005 -
Seca1g05930 216 FunFam MYB-related transcription factor 13 66 - -
Seca1g05930 216 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca1g05930 216 Gene3D - 13 66 - -
Seca1g05930 216 SMART sant 13 63 IPR001005 -
Seca1g05930 216 SMART sant 66 114 IPR001005 -
Seca1g05930 216 FunFam MYB transcription factor 69 116 - -
Seca1g05930 216 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Seca1g05930 216 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca1g05930 216 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca1g05930 216 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca1g05930 216 Gene3D - 68 134 - -
Seca1g05930 216 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca1g05930 216 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05930 Seca-Chr1 162680344 162681598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05930 1 209 MYB Transcription Factor Family AT2G31180 48.148 7.04e-72 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca1g05930 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05930 K09422 - gmx:102663040 325.094