Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05923 ATGTCTTCATCTTTACCTGTTCTTCCCACTCCCCTGGAAAACAAGTATATGAAACCCCCGGATTCTTTTCAGCTTTCACCCATCAGAGATCTTACTGCAAATCCTGCCTCACTGCAAGCTACATCATCAAATTCAATCAGAAGTGTTGGGCAGGTGTTTTCATCCCCAGCTGAATGTCCTGGTGACATCCCTTTTTCCTCTGTTTTACAGCATGATAGGCAATATCAAGAATCTCCCTTCATTTCTCAGACATTAGGTGACGTGTCTTCCGAAATACATTCAACAACATTCGTTTCTCACCCTCAAGAAAATGATGATATTTCCTGGGGACCAGATCCATTTCAGGATATTCTTAGTTTTCCTGAAAATGTTTCTGTCCAGCATGATCAGGTGGAAAACAGTGCTTGTTTCATGAATGATGACAATGTAAAAAAATCGGATTTTGGGGAGTGGGTTGATCAGTTAATGTCTATTGATGATTCTCTTCACCCAAATTGGAATCAGCTTCTTGGTGAGGACAATGTATCAGAATCAAAACCAAAGGCAACACAGGTTTCCCAGCAGCAACAAATACCATCTGGAGAAGGTAATGGTCTTTGTAATTCATCATCTACTGCACCGCAAACTAAGCCTAGAATGCGTTGGACACCAGAACTTCATGAGGCCTTTGTGGAAGCAGTCAATCAGCTTGGTGGTAGTGAAAAGGCTACTCCAAAGGGTGTCTTGAATCTGATGAAAGTTGAAGGCCTTACCATCTATCATGTAAAAAGTCACCTACAGAAATATAGAACTGCCAGATACAAACCTGAGTCATCAGAAGATGCAGGAACTTCTGAGAAAAAGATGAGTTCCATTGAAGAAATGAAATCTCTGGACTTGAAAACATTGGAACTAATAAGATGGCCTAGACAAGTTTTATTTTCACTATTGCTATGA 936 0.4049 MSSSLPVLPTPLENKYMKPPDSFQLSPIRDLTANPASLQATSSNSIRSVGQVFSSPAECPGDIPFSSVLQHDRQYQESPFISQTLGDVSSEIHSTTFVSHPQENDDISWGPDPFQDILSFPENVSVQHDQVENSACFMNDDNVKKSDFGEWVDQLMSIDDSLHPNWNQLLGEDNVSESKPKATQVSQQQQIPSGEGNGLCNSSSTAPQTKPRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVEGLTIYHVKSHLQKYRTARYKPESSEDAGTSEKKMSSIEEMKSLDLKTLELIRWPRQVLFSLLL. 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05923 311 Pfam Myb-like DNA-binding domain 212 263 IPR001005 -
Seca1g05923 311 MobiDBLite consensus disorder prediction 171 211 - -
Seca1g05923 311 Gene3D - 209 268 - -
Seca1g05923 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Seca1g05923 311 MobiDBLite consensus disorder prediction 171 212 - -
Seca1g05923 311 NCBIfam myb-like DNA-binding domain, SHAQKYF class 210 264 IPR006447 GO:0003677
Seca1g05923 311 MobiDBLite consensus disorder prediction 1 23 - -
Seca1g05923 311 FunFam Myb family transcription factor 209 267 - -
Seca1g05923 311 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 180 287 IPR044848 GO:0003700
Seca1g05923 311 SUPERFAMILY Homeodomain-like 208 264 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05923 Seca-Chr1 162612310 162616175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05923 1 285 G2-like Transcription Factor Family AT5G29000 43.182 5.95e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca1g05923 Myb_DNA-binding 8.6e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05923 - - gmx:100803267 472.626