Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca1g05921 | ATGGCCCCCAACCCTAGAGTTATTAAGGCCTTTGGCTTTATGAAGGGCTTAGGGATTTCTACCGAGGAGGTGAAGCCGGTGTTGATGGAGTTGTTAAGCGTTTATAATGGAAGCTGGGAACTTATTGAAGATGACAATTACCAAACACTCATAGATGCATATTTTGATTCTATGAAAGATAAGGGAGTTGAAGGTAAGAGAAAAGCTTCTTTTGATCGTCACAGTGGAGAAAGACCATCACAGAAAGTACACTTGGTGGATGAAGATGACCAGGAAATCATTGAGTCCTCTCAAACTTCCATGGAAGATGTTAAGCCTACGACCCGTTCACAAGCACCACATACAACATTGAGGGAGGCAGAGAAGATTTCCAATAAAGCATCATCTGCAGAGCATCATGGTCATTTTGAGAAAGAGCTTGTGAAATCAAGAAAAAAGAAACCTAAGTTACAATCTCGACCTATTTCAACAAATTATAATGGTAATGGTTCATCTGAGGCTGCAAATGGGAATCATTGTGTCAACCCTCTGTCAACTCATAATCAGGATATGCAAAGTACAGATACTAAATTAGCATGCAATAATAATACCACAACTCATAAGGGAGATATTATGATTGCTTCTTCACGTCAGGGAGAAGTTAAAATATCTTTAAATTGTGACTCTGCTTTGCAACAATCAAACTTCTGCACTCCTAATTTGGATGTTGTTATGAAATCCATAGAAGAGAAGTACCTTAGTTCTTGCAAGACTGTTGGGCCTCAATTTTCTATGGTAAAACTATTAGATGATTTATGCAGGAGTTATTTGAAGTCGGGATATAGAGAGGGATCAAGTTCCAAGCATGCCAATTCACACAACTTGGCATGTCTACCACAGCAATCTGTTACTCAACATGAAAAGAATTCCTTTCATTTTATCAGTGACATAACAAAAGGTTCAGAAAAGGTGAAAATATCATTAATAGATGAAATTGGCAATGGGGACTTACCAAAGTTTAATTACATACCACATAATGTAATATATCAAAGTGCTAATGTAAATATTTCATTGGCTCGGATTGCGGATGAGGGTTGTTGTTCTGATTGTTCAGGCGATTGTCTTTCCTCATCATTTCCTTGTGCATGTGCTCAAGAAACTGGTGGAGAGTTTGCTTACACACCACAAGGTTTATTGAAAGAAGAATTTCTAACAGCTTGCATGTCTATGAAGGATGAACCTCAAAATCATCATTATGTGTACTGTCAAGAGTGTCCATTGGAGAAGAGCAAGAATGAGTACATGCCTGAAAAATGCAAAGGGCATTTGGTTAAGAAGTTTATAAAGGAATGTTGGACCAAATGTGGATGTGACATGTCCTGCGGAAATCGAATAGTGCAAAGAGGTTTAAGATGCAAATTGCAGGTGTTCTTAACTCGTGAAGGTAAGGGATGGGGACTTAGAACACTAGAAAATTTGCCGAAGGGAACTTTTGTATGTGAATATGTTGGGGAAATATTAACCAACACAGAGTTATACGAAAGGAATGTGCAGAATCGTGGCAGTGACAGACATACATATCCTGTAACTCTTGATGCAGACTGGGGCTCAGAAGGGGTATTAAAGGATGAGGAGGCACTATGTTTAGATGCAACATATAATGGAAATGTTGCCAGGTTCATCAATCATAGATGCTATGATGCAAATCTCATAGATATTCCTGTTGAAGTGGAGACTCCTGATCACCACTATTATCATGTTGCCTTCTTTACCAACAGGAAAGTGAATGCATATGAGGAGTTAACGTGGGATTATGGTATTGATTTTGATGATCATGACCACCCTATTGAAGCATTTCGATGTTGTTGTGGAAGCGCGTTCTGCGGTGATAAGAAACAAAAAGGGAAAAGAAAAATAGAAAATTCAGTTCATGGGACGAGGAATGTGAACACAACCAATTGA | 1941 | 0.3859 | MAPNPRVIKAFGFMKGLGISTEEVKPVLMELLSVYNGSWELIEDDNYQTLIDAYFDSMKDKGVEGKRKASFDRHSGERPSQKVHLVDEDDQEIIESSQTSMEDVKPTTRSQAPHTTLREAEKISNKASSAEHHGHFEKELVKSRKKKPKLQSRPISTNYNGNGSSEAANGNHCVNPLSTHNQDMQSTDTKLACNNNTTTHKGDIMIASSRQGEVKISLNCDSALQQSNFCTPNLDVVMKSIEEKYLSSCKTVGPQFSMVKLLDDLCRSYLKSGYREGSSSKHANSHNLACLPQQSVTQHEKNSFHFISDITKGSEKVKISLIDEIGNGDLPKFNYIPHNVIYQSANVNISLARIADEGCCSDCSGDCLSSSFPCACAQETGGEFAYTPQGLLKEEFLTACMSMKDEPQNHHYVYCQECPLEKSKNEYMPEKCKGHLVKKFIKECWTKCGCDMSCGNRIVQRGLRCKLQVFLTREGKGWGLRTLENLPKGTFVCEYVGEILTNTELYERNVQNRGSDRHTYPVTLDADWGSEGVLKDEEALCLDATYNGNVARFINHRCYDANLIDIPVEVETPDHHYYHVAFFTNRKVNAYEELTWDYGIDFDDHDHPIEAFRCCCGSAFCGDKKQKGKRKIENSVHGTRNVNTTN. | 647 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca1g05921 | 646 | Pfam | SET domain | 477 | 599 | IPR001214 | GO:0005515 | |
Seca1g05921 | 646 | CDD | SET_SETDB-like | 331 | 599 | - | - | |
Seca1g05921 | 646 | ProSiteProfiles | Pre-SET domain profile. | 359 | 462 | IPR007728 | GO:0005634|GO:0008270|GO:0034968|GO:0042054 | |
Seca1g05921 | 646 | Gene3D | SET domain | 289 | 608 | IPR046341 | - | |
Seca1g05921 | 646 | MobiDBLite | consensus disorder prediction | 115 | 144 | - | - | |
Seca1g05921 | 646 | SMART | set_7 | 465 | 605 | IPR001214 | GO:0005515 | |
Seca1g05921 | 646 | MobiDBLite | consensus disorder prediction | 96 | 175 | - | - | |
Seca1g05921 | 646 | Gene3D | - | 1 | 59 | IPR043017 | - | |
Seca1g05921 | 646 | ProSiteProfiles | SET domain profile. | 465 | 599 | IPR001214 | GO:0005515 | |
Seca1g05921 | 646 | MobiDBLite | consensus disorder prediction | 152 | 175 | - | - | |
Seca1g05921 | 646 | Pfam | Pre-SET motif | 310 | 457 | IPR007728 | GO:0005634|GO:0008270|GO:0034968|GO:0042054 | |
Seca1g05921 | 646 | PANTHER | INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED | 1 | 631 | - | - | |
Seca1g05921 | 646 | SUPERFAMILY | SET domain | 317 | 621 | IPR046341 | - | |
Seca1g05921 | 646 | ProSiteProfiles | Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. | 1 | 637 | IPR025776 | - | |
Seca1g05921 | 646 | FunFam | SET-domain containing protein lysine methyltransferase family protein | 310 | 624 | - | - | |
Seca1g05921 | 646 | Pfam | Ubiquitin-binding WIYLD domain | 6 | 57 | IPR018848 | - | |
Seca1g05921 | 646 | MobiDBLite | consensus disorder prediction | 97 | 114 | - | - | |
Seca1g05921 | 646 | SMART | preset_2 | 307 | 449 | IPR007728 | GO:0005634|GO:0008270|GO:0034968|GO:0042054 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca1g05921 | Seca-Chr1 | 162593226 | 162607012 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca1g05921 | 441 | 599 | C2H2 Transcription Factor Family | AT2G23740 | 43.125 | 9.24e-31 | 127 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SET | Seca1g05921 | Pre-SET | 3.9e-17 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca1g05921 | - | - | gsj:114402909 | 878.626 |