Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05921 ATGGCCCCCAACCCTAGAGTTATTAAGGCCTTTGGCTTTATGAAGGGCTTAGGGATTTCTACCGAGGAGGTGAAGCCGGTGTTGATGGAGTTGTTAAGCGTTTATAATGGAAGCTGGGAACTTATTGAAGATGACAATTACCAAACACTCATAGATGCATATTTTGATTCTATGAAAGATAAGGGAGTTGAAGGTAAGAGAAAAGCTTCTTTTGATCGTCACAGTGGAGAAAGACCATCACAGAAAGTACACTTGGTGGATGAAGATGACCAGGAAATCATTGAGTCCTCTCAAACTTCCATGGAAGATGTTAAGCCTACGACCCGTTCACAAGCACCACATACAACATTGAGGGAGGCAGAGAAGATTTCCAATAAAGCATCATCTGCAGAGCATCATGGTCATTTTGAGAAAGAGCTTGTGAAATCAAGAAAAAAGAAACCTAAGTTACAATCTCGACCTATTTCAACAAATTATAATGGTAATGGTTCATCTGAGGCTGCAAATGGGAATCATTGTGTCAACCCTCTGTCAACTCATAATCAGGATATGCAAAGTACAGATACTAAATTAGCATGCAATAATAATACCACAACTCATAAGGGAGATATTATGATTGCTTCTTCACGTCAGGGAGAAGTTAAAATATCTTTAAATTGTGACTCTGCTTTGCAACAATCAAACTTCTGCACTCCTAATTTGGATGTTGTTATGAAATCCATAGAAGAGAAGTACCTTAGTTCTTGCAAGACTGTTGGGCCTCAATTTTCTATGGTAAAACTATTAGATGATTTATGCAGGAGTTATTTGAAGTCGGGATATAGAGAGGGATCAAGTTCCAAGCATGCCAATTCACACAACTTGGCATGTCTACCACAGCAATCTGTTACTCAACATGAAAAGAATTCCTTTCATTTTATCAGTGACATAACAAAAGGTTCAGAAAAGGTGAAAATATCATTAATAGATGAAATTGGCAATGGGGACTTACCAAAGTTTAATTACATACCACATAATGTAATATATCAAAGTGCTAATGTAAATATTTCATTGGCTCGGATTGCGGATGAGGGTTGTTGTTCTGATTGTTCAGGCGATTGTCTTTCCTCATCATTTCCTTGTGCATGTGCTCAAGAAACTGGTGGAGAGTTTGCTTACACACCACAAGGTTTATTGAAAGAAGAATTTCTAACAGCTTGCATGTCTATGAAGGATGAACCTCAAAATCATCATTATGTGTACTGTCAAGAGTGTCCATTGGAGAAGAGCAAGAATGAGTACATGCCTGAAAAATGCAAAGGGCATTTGGTTAAGAAGTTTATAAAGGAATGTTGGACCAAATGTGGATGTGACATGTCCTGCGGAAATCGAATAGTGCAAAGAGGTTTAAGATGCAAATTGCAGGTGTTCTTAACTCGTGAAGGTAAGGGATGGGGACTTAGAACACTAGAAAATTTGCCGAAGGGAACTTTTGTATGTGAATATGTTGGGGAAATATTAACCAACACAGAGTTATACGAAAGGAATGTGCAGAATCGTGGCAGTGACAGACATACATATCCTGTAACTCTTGATGCAGACTGGGGCTCAGAAGGGGTATTAAAGGATGAGGAGGCACTATGTTTAGATGCAACATATAATGGAAATGTTGCCAGGTTCATCAATCATAGATGCTATGATGCAAATCTCATAGATATTCCTGTTGAAGTGGAGACTCCTGATCACCACTATTATCATGTTGCCTTCTTTACCAACAGGAAAGTGAATGCATATGAGGAGTTAACGTGGGATTATGGTATTGATTTTGATGATCATGACCACCCTATTGAAGCATTTCGATGTTGTTGTGGAAGCGCGTTCTGCGGTGATAAGAAACAAAAAGGGAAAAGAAAAATAGAAAATTCAGTTCATGGGACGAGGAATGTGAACACAACCAATTGA 1941 0.3859 MAPNPRVIKAFGFMKGLGISTEEVKPVLMELLSVYNGSWELIEDDNYQTLIDAYFDSMKDKGVEGKRKASFDRHSGERPSQKVHLVDEDDQEIIESSQTSMEDVKPTTRSQAPHTTLREAEKISNKASSAEHHGHFEKELVKSRKKKPKLQSRPISTNYNGNGSSEAANGNHCVNPLSTHNQDMQSTDTKLACNNNTTTHKGDIMIASSRQGEVKISLNCDSALQQSNFCTPNLDVVMKSIEEKYLSSCKTVGPQFSMVKLLDDLCRSYLKSGYREGSSSKHANSHNLACLPQQSVTQHEKNSFHFISDITKGSEKVKISLIDEIGNGDLPKFNYIPHNVIYQSANVNISLARIADEGCCSDCSGDCLSSSFPCACAQETGGEFAYTPQGLLKEEFLTACMSMKDEPQNHHYVYCQECPLEKSKNEYMPEKCKGHLVKKFIKECWTKCGCDMSCGNRIVQRGLRCKLQVFLTREGKGWGLRTLENLPKGTFVCEYVGEILTNTELYERNVQNRGSDRHTYPVTLDADWGSEGVLKDEEALCLDATYNGNVARFINHRCYDANLIDIPVEVETPDHHYYHVAFFTNRKVNAYEELTWDYGIDFDDHDHPIEAFRCCCGSAFCGDKKQKGKRKIENSVHGTRNVNTTN. 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05921 646 Pfam SET domain 477 599 IPR001214 GO:0005515
Seca1g05921 646 CDD SET_SETDB-like 331 599 - -
Seca1g05921 646 ProSiteProfiles Pre-SET domain profile. 359 462 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca1g05921 646 Gene3D SET domain 289 608 IPR046341 -
Seca1g05921 646 MobiDBLite consensus disorder prediction 115 144 - -
Seca1g05921 646 SMART set_7 465 605 IPR001214 GO:0005515
Seca1g05921 646 MobiDBLite consensus disorder prediction 96 175 - -
Seca1g05921 646 Gene3D - 1 59 IPR043017 -
Seca1g05921 646 ProSiteProfiles SET domain profile. 465 599 IPR001214 GO:0005515
Seca1g05921 646 MobiDBLite consensus disorder prediction 152 175 - -
Seca1g05921 646 Pfam Pre-SET motif 310 457 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca1g05921 646 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 631 - -
Seca1g05921 646 SUPERFAMILY SET domain 317 621 IPR046341 -
Seca1g05921 646 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 637 IPR025776 -
Seca1g05921 646 FunFam SET-domain containing protein lysine methyltransferase family protein 310 624 - -
Seca1g05921 646 Pfam Ubiquitin-binding WIYLD domain 6 57 IPR018848 -
Seca1g05921 646 MobiDBLite consensus disorder prediction 97 114 - -
Seca1g05921 646 SMART preset_2 307 449 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05921 Seca-Chr1 162593226 162607012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05921 441 599 C2H2 Transcription Factor Family AT2G23740 43.125 9.24e-31 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca1g05921 Pre-SET 3.9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05921 - - gsj:114402909 878.626