Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05913 ATGACAAAGTTGTCCTATTTGCATGAGCCTGGAGTCTTGCAGAACTTAAAAATTAGATATGAATTGAATGAAATATATACTTATACTGGAAATATTCTGATTGCAATAAATCCATTCCAAAAACTACCTCATATTTATGATGCACACATGATGCAACAATACAAGGGAGCACCATTTGGAGAGTTAAGCCCTCATGTATTTGCAGTTGCTGATGTTGCATATAGGGCAATGATTAATGAAACAAAAAGCAATTCAATTCTGGTCAGTGGGGAAAGTGGAGCTGGTAAAACTGAAACTACAAAAATGCTTATGCAATACCTTGCTTTCTTAGGTGGTAGGGTTGCCACTGAAGGACGAACAGTTGAACAACAAGTTCTTGAATCAAACCCAGTTTTGGAAGCATTTGGTAATGCTAAAACTGTCAGGAATAACAATTCCAGTCGTTTTGGTAAATTTGTTGAGATCCAATTTGATAAGAGTGGAAGAATCTCAGGAGCAGCCATTCGAACATACCTTCTAGAGAGATCTCGGGTTTGCCAAATTAATGATCCTGAACGCAACTACCACTGCTTTTATCTTCTTTGTGCTGCACCACAGGAGGAAATTGAGAAATACAAATTAGGGCATCCTAAAACATTTCATTACCTTAACCAGTCAAAATGCTTTGAACTGGCTGATATAAGTGATTCTCGTGAGTATCTTGCCACTAGGAGAGCTATGGATATTGTTGGAATAAGCCAAAAAGAGCAGGAAGCAATTTTCAGAGTTGTTGCTTCGATTCTTCATCTTGGTAATATTGAGTTTGCTAAAGGAAAGGAAGTTGATTCATCAGTTCCAAAAGATGATAAATCCAAATTCCACTTAAAAACAACTGCTGAGCTCCTTATGTGTGACGTTGGTGGCTTGGAAGATGCATTATGCAAGCGTGTCATGATCACCCCTGAGGAAGTTATAAAACGGAGCCTTGATCCCCAAAGTGCAACAGTCAGCAGAGATGGCTTAGCAAAAACAATTTATTCTAGGCTGTTTGACTGGTTGGTGGACAAGATTAATAATTCAATCGGACAAGACTCCAATTCTAAATCTTTGATTGGGGTCCTTGATATCTATGGTTTTGAAAGCTTTAAATCTAACAGTTTTGAGCAGTTCTGCATTAATTTCACAAATGAGAAGTTGCAGCAACATTTCAATCAGCACGTGTTTAAAATGGAACAAGAAGAATATACGAAGGAGCAGATCAATTGGAGCTACATTGAATTTGTTGACAACCAAGATGTTTTGGACCTTATTGAAAAGAAACCTGGAGGAATCATTGCTCTCCTTGATGAAGCTTGCATGTTTCCTAAGTCAACACATGAAACATTTTCAAACAAACTTTATCAAACATTTAAGAATCACAAGCGCTTTATAAAGCCAAAATTGTCTCGAACAGATTTCACCATTTCTCATTATGCTGGCGAGGTGCTGTACCAGTCTGACCAATTTTTAGATAAAAACAAGGATTATGTGGTTCCTGAACATCAAGATTTATTGAGTGCTTCGAAATGCCCTTTTGTAGTAGGCCTTTTTCCTCCACTTCCAGAAGAGACATCAAAATCTTCAAAATTTTCTTCAATTGGGTCTCGTTTTAAGCTGCAACTACAACAGCTAATGGAAACACTAAACTCAACCGAGCCTCATTACATTAGATGTGTGAAACCAAACAACCTCCTCAAGCCTGCAGTTTTTGAGAATGTCAATATTATGCAACAACTTCGCTGTGGTGGTGTTTTAGAGGCAATCAGAATCAGTTGTGCTGGGTACCCTACTCGCCGTGCTTTCTTTGAGTTTATAAACCGTTTTTCCCTCCTTGCCCCAGAGGTCACAGAAGCAAACCATGATGAGAAGACTGTTTGCCAAAAGATTTTAGAAAAGATGGGGCTTAAAGGATATCAGATTGGAAAAACAAAGGTATTCCTAAGAGCAGGTCAGATGGCTGAACTAGACGCAAGGAGAGCTCAAGTACTAAGTAATGCAGCAAAAACTATCCAACGGCGTATACGAACCCATCAAGCTCGTAAATATTATCTTGCATTACGAATGAAGACGATATACGTGCAGTCTCTGTGGAGAGGAAGACTTGCATGCAAACTTTATCATCACCTGAGAAGAGAGGCTGCTGCTGTGAAAATTCAGAAGAATGCACGTAGATATGAAGCTAGGAAAGCGTATACTAAACTCCAAGCATCAGTACTTACTTTGCAAACAGCTTTGAGGGCAATTGCTGCCCTTAAGGAGTACAGTTTCAGGAGACGGACTAAAGCTTCCGTCATAATTCAGGCTCGGTGGCGGTGCCACAAAGCTTCCTCGTATTATAAGAGGCTGAGGAAAGGTGCAATAGTGACCCAATGCCGATGGAGGGGGCGTTTGGGCAGGAAAGAACTTAGGAAACTGAAAATGGCTGCAAGAGAAACTGGCGCACTTAAAGAAGCAAAGGACAAGCTTGAAAAACGAGTGGAGGAACTCACTTGGCGTCTCCAACTAGAAAAGAGTTTAAGGACCAACCTAGAAGAATCCAAAGCACAAGAGATAGCAAAACTGCAGAATTCACTGCAGGAGATGCAGGGAAAAGTTGATGAAGCCAATGCTGTGCTTGTAAAGGAGCGAGAGAATGCAAAGAAAGCTGTTGAAGAAACACCTCCTGTTATTAAAGAAACTCAGGTTATTGTTGAAGACACACAGAAGATTGAATCACTAACAGCGGAAGTTGAGAACCTAAAGACTTCACTAGAGTCTGAGAAAGAAAAAGCTGATGATTTTGAAAGGAAATATAATGAAGTCCAAGCTTCAAGTGAAGAAAGGGGTAAAAAATTAGAAGATACAGAGAAGAAGGTCCGTCAGCTCCAAGAATCGTTGACCAGGCTAGAAGAGAAGATTACTAATTTAGAATCAGAGAATCAGGTTCTACGTCAACAAGCTGTGTCCATGGCACCTAATAAGTTCCTCTCAGGACGCTCCAGATCAATTATTCAGAGAGCTGACAGTGGACATATTGCAGTGGAAGCAAAACCACATTTGGATATGCATAGCCCATCAATGAACCACAGGGAATCGTCTGAAGTGGAGGATAAACCACAGAGGTCATTGAATGAGAAACAACAGGAGAACCAAGAGTTGCTCATTAGATGTATAGCACAACATCTAGGCTTTGCTGGCAATAGACCAATTGCTGCCTGTATCATATACAAATGCCTCTTGCATTGGAGATCATTTGAAGTTGAGCGTACTAGCGTTTTTGATCGTATAATCCAAACTATTGGCCATGCAATTGAGACCCAGGATAACAATGATGTCTTGGCTTATTGGTTATCCAATGCTTCTACACTTCTCTTGTTGCTCCAGCGAACACTTAAGGCAAGTGGTGCTGCTGGAATGGCTCCTCAACGCCGTCGTTCTTCCTCAGCAACCCTGTTTGGGAGAATGACACAAAGTTTCCGTGGAGCTCCAGCAGGAGTCAATCTTTCCCTAATAAATGGTAGCATGAGTGGTGGAGTAGATACATTAAGACAAGTTGAAGCCAAGTACCCAGCACTGCTTTTCAAACAGCAGCTTACAGCTTATGTTGAAAAGATATATGGAATGATTCGAGATAACTTGAAGAAAGAAATATCTCCCTTGCTCGGATTATGCATCCAGGCACCAAGAACATCCAGAGCAAGCTTGGTTAAAGGATCATCACGTTCAGTTGCAACCACTGAAGCCCAGAAAGCTCTGATTGCTCACTGGCAGGGGATAGTTAAGAGCCTTGGGAACTTCTTAAATACTTTGAAAGCAAATCATGTTCCCCCATTTTTGGTTCGTAAGGTGTTCACTCAAATTTTTTCTTTCATCAATGTCCAACTATTCAATAGTCTTCTTTTAAGAAGGGAGTGCTGCTCATTTAGTAATGGAGAATATGTGAAAGCTGGTTTGGCTGAACTGGAGCATTGGTGTTACAAGGCAACAGATGAGTATGCAGGTTCCGCCTGGGATGAGCTCAAACATATTAGACAGGCTATTGGATTTCTGGTCATACATCAGAAACCAAAGAAAACGCTAGATGAAATAAGTCATGACCTATGCCCAGTCCTCAGTATACAACAGCTATATCGAATTAGTACCATGTACTGGGATGACAAGTACGGCACACATAGCGTATCCCCTGATAAAAACTATGTTGAGCTTTGCCGTATCAATGTTTTCATCTAG 4227 0.4057 MTKLSYLHEPGVLQNLKIRYELNEIYTYTGNILIAINPFQKLPHIYDAHMMQQYKGAPFGELSPHVFAVADVAYRAMINETKSNSILVSGESGAGKTETTKMLMQYLAFLGGRVATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAIRTYLLERSRVCQINDPERNYHCFYLLCAAPQEEIEKYKLGHPKTFHYLNQSKCFELADISDSREYLATRRAMDIVGISQKEQEAIFRVVASILHLGNIEFAKGKEVDSSVPKDDKSKFHLKTTAELLMCDVGGLEDALCKRVMITPEEVIKRSLDPQSATVSRDGLAKTIYSRLFDWLVDKINNSIGQDSNSKSLIGVLDIYGFESFKSNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEQINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSNKLYQTFKNHKRFIKPKLSRTDFTISHYAGEVLYQSDQFLDKNKDYVVPEHQDLLSASKCPFVVGLFPPLPEETSKSSKFSSIGSRFKLQLQQLMETLNSTEPHYIRCVKPNNLLKPAVFENVNIMQQLRCGGVLEAIRISCAGYPTRRAFFEFINRFSLLAPEVTEANHDEKTVCQKILEKMGLKGYQIGKTKVFLRAGQMAELDARRAQVLSNAAKTIQRRIRTHQARKYYLALRMKTIYVQSLWRGRLACKLYHHLRREAAAVKIQKNARRYEARKAYTKLQASVLTLQTALRAIAALKEYSFRRRTKASVIIQARWRCHKASSYYKRLRKGAIVTQCRWRGRLGRKELRKLKMAARETGALKEAKDKLEKRVEELTWRLQLEKSLRTNLEESKAQEIAKLQNSLQEMQGKVDEANAVLVKERENAKKAVEETPPVIKETQVIVEDTQKIESLTAEVENLKTSLESEKEKADDFERKYNEVQASSEERGKKLEDTEKKVRQLQESLTRLEEKITNLESENQVLRQQAVSMAPNKFLSGRSRSIIQRADSGHIAVEAKPHLDMHSPSMNHRESSEVEDKPQRSLNEKQQENQELLIRCIAQHLGFAGNRPIAACIIYKCLLHWRSFEVERTSVFDRIIQTIGHAIETQDNNDVLAYWLSNASTLLLLLQRTLKASGAAGMAPQRRRSSSATLFGRMTQSFRGAPAGVNLSLINGSMSGGVDTLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGSSRSVATTEAQKALIAHWQGIVKSLGNFLNTLKANHVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEHWCYKATDEYAGSAWDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSPDKNYVELCRINVFI. 1409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05913 1408 PANTHER MYOSIN 1 1394 - -
Seca1g05913 1408 Gene3D Myosin VI head, motor domain, U50 subdomain 246 535 - -
Seca1g05913 1408 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 719 IPR027417 -
Seca1g05913 1408 FunFam unconventional myosin-Va 671 719 - -
Seca1g05913 1408 Gene3D - 186 244 - -
Seca1g05913 1408 Gene3D Kinesin motor domain 1 596 IPR036961 -
Seca1g05913 1408 ProSiteProfiles Dilute domain profile. 1093 1406 IPR002710 -
Seca1g05913 1408 FunFam Class V myosin 373 510 - -
Seca1g05913 1408 CDD MYSc_Myo11 10 654 IPR036018 -
Seca1g05913 1408 Pfam IQ calmodulin-binding motif 789 809 IPR000048 GO:0005515
Seca1g05913 1408 Pfam IQ calmodulin-binding motif 766 786 IPR000048 GO:0005515
Seca1g05913 1408 Pfam IQ calmodulin-binding motif 719 737 IPR000048 GO:0005515
Seca1g05913 1408 Pfam IQ calmodulin-binding motif 671 689 IPR000048 GO:0005515
Seca1g05913 1408 ProSiteProfiles IQ motif profile. 765 791 IPR000048 GO:0005515
Seca1g05913 1408 ProSiteProfiles Myosin motor domain profile. 1 666 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca1g05913 1408 Pfam Myosin head (motor domain) 1 654 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca1g05913 1408 Gene3D - 601 667 - -
Seca1g05913 1408 PRINTS Myosin heavy chain signature 416 444 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca1g05913 1408 PRINTS Myosin heavy chain signature 363 391 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca1g05913 1408 PRINTS Myosin heavy chain signature 26 45 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca1g05913 1408 PRINTS Myosin heavy chain signature 83 108 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca1g05913 1408 PRINTS Myosin heavy chain signature 130 157 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca1g05913 1408 MobiDBLite consensus disorder prediction 1018 1044 - -
Seca1g05913 1408 FunFam unconventional myosin-Va 767 815 - -
Seca1g05913 1408 ProSiteProfiles IQ motif profile. 717 746 IPR000048 GO:0005515
Seca1g05913 1408 ProSiteProfiles IQ motif profile. 788 817 IPR000048 GO:0005515
Seca1g05913 1408 MobiDBLite consensus disorder prediction 930 956 - -
Seca1g05913 1408 Pfam DIL domain 1282 1385 IPR002710 -
Seca1g05913 1408 CDD MyosinXI_CBD 1044 1395 IPR037975 GO:0007015
Seca1g05913 1408 Gene3D - 668 718 - -
Seca1g05913 1408 Gene3D - 767 816 - -
Seca1g05913 1408 Gene3D - 719 766 - -
Seca1g05913 1408 Coils Coil 811 845 - -
Seca1g05913 1408 Coils Coil 850 891 - -
Seca1g05913 1408 Gene3D - 373 557 - -
Seca1g05913 1408 FunFam Myosin heavy chain 186 241 - -
Seca1g05913 1408 MobiDBLite consensus disorder prediction 1018 1045 - -
Seca1g05913 1408 Coils Coil 902 985 - -
Seca1g05913 1408 SMART DIL_2 1281 1388 IPR002710 -
Seca1g05913 1408 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 719 817 IPR027417 -
Seca1g05913 1408 SMART MYSc_2a 1 667 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca1g05913 1408 FunFam Myosin 2 246 363 - -
Seca1g05913 1408 ProSiteProfiles IQ motif profile. 669 696 IPR000048 GO:0005515
Seca1g05913 1408 ProSiteProfiles IQ motif profile. 692 721 IPR000048 GO:0005515
Seca1g05913 1408 SMART iq_5 787 809 IPR000048 GO:0005515
Seca1g05913 1408 SMART iq_5 668 690 IPR000048 GO:0005515
Seca1g05913 1408 SMART iq_5 764 786 IPR000048 GO:0005515
Seca1g05913 1408 SMART iq_5 691 713 IPR000048 GO:0005515
Seca1g05913 1408 SMART iq_5 716 738 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05913 Seca-Chr1 162531145 162544078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05913 1 1395 Myosins gene family AT1G54560 84.384 0.0 2482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05913 K10357 - gmx:100816792 2512.64