LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca1g05903	ATGCATACCCGTGCATGTCTCTTGCTTTCTCTTGTGGGTATCCTTGTCTTGTTGAATGGCATTCATGGTGCATGGACAGAGGAGCCAGGATCATTGATCCTGGGTTGTGGGTTGGGTGAAGGAGGTGCCAAAGATGTTGATGGAAGGCAATGGATCCCTGATGATAAGTTCCTTGAAGCACAAGGTAATTCAATCACATCCAAAGCCTCTTACCAAGACCCTTCTGTTTTGTCTGAGGTTCCATACATGTCAGCTAGAGTTTTCACATCAGAGGCAACATACAAATTCCCTGTTCTACCTGATAAACGCTATTGGCTCAGGCTCCATTTTTATCCATCTCTTTATGGCAGTCTCAACCCTTCTGATTCATATTTCTCCGTGACTGCAAATGGGGTTACGCTTCTCAGCAATTTCAGCGCCTCAATCACTTGTGAGGCCCTCTCACAAGCTTACATTGACAGAGAGTATTCCCTTGCACCTTTGAATACAGATAGTTTGACCCTTACCTTCAAGCCATCTGACAAGTACAAAGGGGCTTTTGCTTTCGTCAATGGCATTCAGTTGATCCCAATGCCAGAGTTATTTGATTCTGGTGCATTGGTTGGGTATGCTGACCAAACCGTGGATGTCAAAAGCTTGAATTTGCAAACCATGTTCAGACTAAACGTTGGTGGACAATATATATCTCCCACACAAGATTCTGGCCTTACAAGGATGTGGTATGATGACACACCTTACTTGTATGGTGCAGCCACTGGTGTCACCAACCAAGCTGAAAAGGATGTCCAAATCAACTACCAGACCATGCCACGGTATGTTGCTCCTGCTGATGTCTACTCCACATCAAGATCAATGGGAAATGACAAGGATGTCAATATGGGCTTCAATCTCACTTGGATTTTCCAAATTGATCCAAATTCCATGTACCTTACGAGGTTGCATTTCTGTGATTACTATTATTCCAAAGTCAATGAGATTGTTTTCAATATCTATGTCAACAACCAAACTGCAGAAGCTCAAGCTGATGTGATTGGATGGACAGGAGGTAAAGGGGTGCCAACTTACAAGGACTATGTGGTATATGTCCAAGATGTGGAGGGGGATGAGCAGCTTTGGCTTGCTCTACACCCAGCACCTGATACAATGCCAGAGTTCTATGATGCCATACTCAATGGGGTGGAGATATTCAAGATCAATGACACAAACTTGTCTGAGATGTTCCTCAGGCATCAAGGGGATGGAATGGGTTTCCAAAACCCCAAAGCATATGATAAGAATGCTGTTATTGGTGGAGCTGCTGGAGGTGCTGCTGGTTTTGCCTTAATGGCTGCAATATGTGTTGCTGTCTACCACAAGAAGAAGAGAGCTCCGGGGTCTGACACACACACAAGCTGGCTTCCCATCTACTTGAACTCACACACAAATGGCAGCAAATCCACCTCATCTGGGAAGAGCATTGCTAGTGGCAACCTCTCTGTCATGGCTCAAGGTCTTTGCCGCTATTTCTCCTTACAAGAGATAAAGCATGCAACCAAGAATTTTGATGAATCCAACGTTATTGGGGTTGGTGGATTTGGAAAGGTTTACAAGGGTGTCATTGATAATGGAATGAAGGTGGCAATTAAGAGGTCTAATCCACAATCAGAACAAGGAGTTAATGAATTCCAGACTGAAATTGAGATGCTTTCCAAGCTGAGACACAAGCATTTGGTGTCCTTGATTGGATTTTGTGAGGAAGATGATGAGATGTGCCTGGTTTATGACTACATGGCTCTTGGAACCTTTAGGGAACATTTGTATAAAGGCAACAAGCCTTTGTCTACTCTATCATGGAAGCAAAGGTTGGAGATTTGCATTGGAGCTGCAAGAGGGCTTCACTACCTTCACACAGGAGCTAAGTACACCATCATTCATAGAGATGTTAAAACAACTAACATTCTCTTGGATGAAAACTGGGTTGCCAAGGTTTCAGATTTTGGGTTGTCAAAAACGGGTCCAAATATGAACACTGGACATGTTAGTACTGTGGTGAAGGGTAGTTTTGGCTACTTGGATCCTGAATATTTCAGGAGGCAACAGTTGACTGAAAAGTCTGATGTCTACTCATTTGGGGTTGTGCTATTTGAAGCCCTCTGCGCTAGGCCTGTTTTGAATCCTAATCTTCCAAAGGAACAGGTTAGTCTTGCGGATTGGGCATTGATCTGCAAACAAAAAGGAACTCTAGAGGATATTATAGACCCCCATATCAAGGGAAAGATTAATCCAGAAAGCTTGAAAAAGTTTGTAGACACAGCTGAAAAGTGTTTGTCTGACAGTGGACTTGACCGTCCCTCCATGAATGATTTGTTGTGGAATTTAGAATTTGCTCTCAACCTGCAAGAGAACGTTGATGGTTCAACTCACTCTTCTCGTGTTGAGGAAAGTGAGTTTGAAGAAATAAGCTTGAGAGACAAGGACATGGCTGCCCATTATAAGAACCTGAGCCTTGGAAGTGAGCATGAGCTTAGCCAGGATTCAAGTGAGAATCCCACTGCCATCTTCTCACAACTTGTCAATCCTACAGGGCGATGA	2571	0.4368	MHTRACLLLSLVGILVLLNGIHGAWTEEPGSLILGCGLGEGGAKDVDGRQWIPDDKFLEAQGNSITSKASYQDPSVLSEVPYMSARVFTSEATYKFPVLPDKRYWLRLHFYPSLYGSLNPSDSYFSVTANGVTLLSNFSASITCEALSQAYIDREYSLAPLNTDSLTLTFKPSDKYKGAFAFVNGIQLIPMPELFDSGALVGYADQTVDVKSLNLQTMFRLNVGGQYISPTQDSGLTRMWYDDTPYLYGAATGVTNQAEKDVQINYQTMPRYVAPADVYSTSRSMGNDKDVNMGFNLTWIFQIDPNSMYLTRLHFCDYYYSKVNEIVFNIYVNNQTAEAQADVIGWTGGKGVPTYKDYVVYVQDVEGDEQLWLALHPAPDTMPEFYDAILNGVEIFKINDTNLSEMFLRHQGDGMGFQNPKAYDKNAVIGGAAGGAAGFALMAAICVAVYHKKKRAPGSDTHTSWLPIYLNSHTNGSKSTSSGKSIASGNLSVMAQGLCRYFSLQEIKHATKNFDESNVIGVGGFGKVYKGVIDNGMKVAIKRSNPQSEQGVNEFQTEIEMLSKLRHKHLVSLIGFCEEDDEMCLVYDYMALGTFREHLYKGNKPLSTLSWKQRLEICIGAARGLHYLHTGAKYTIIHRDVKTTNILLDENWVAKVSDFGLSKTGPNMNTGHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEALCARPVLNPNLPKEQVSLADWALICKQKGTLEDIIDPHIKGKINPESLKKFVDTAEKCLSDSGLDRPSMNDLLWNLEFALNLQENVDGSTHSSRVEESEFEEISLRDKDMAAHYKNLSLGSEHELSQDSSENPTAIFSQLVNPTGR.	857

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca1g05903	856	Gene3D	-	213	399	-	-
	Seca1g05903	856	Gene3D	-	34	191	-	-
	Seca1g05903	856	FunFam	receptor-like protein kinase FERONIA	476	589	-	-
	Seca1g05903	856	SMART	serkin_6	514	789	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca1g05903	856	Pfam	Malectin-like domain	35	398	IPR024788	-
	Seca1g05903	856	FunFam	FERONIA receptor-like kinase	31	192	-	-
	Seca1g05903	856	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	636	648	IPR008271	GO:0004672\|GO:0006468
	Seca1g05903	856	PANTHER	OS07G0166700 PROTEIN	498	793	IPR045272	GO:0004714\|GO:0006468
	Seca1g05903	856	Pfam	Protein tyrosine and serine/threonine kinase	518	782	IPR001245	GO:0004672\|GO:0006468
	Seca1g05903	856	ProSiteProfiles	Protein kinase domain profile.	514	789	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca1g05903	856	MobiDBLite	consensus disorder prediction	830	856	-	-
	Seca1g05903	856	FunFam	Receptor-like protein kinase FERONIA	590	805	-	-
	Seca1g05903	856	SUPERFAMILY	Protein kinase-like (PK-like)	490	789	IPR011009	-
	Seca1g05903	856	CDD	STKc_IRAK	520	787	-	-
	Seca1g05903	856	Gene3D	Phosphorylase Kinase; domain 1	474	589	-	-
	Seca1g05903	856	Gene3D	Transferase(Phosphotransferase) domain 1	590	809	-	-
	Seca1g05903	856	ProSitePatterns	Protein kinases ATP-binding region signature.	520	542	IPR017441	GO:0005524
	Seca1g05903	856	FunFam	FERONIA receptor-like kinase	213	399	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca1g05903	Seca-Chr1	162426469	162429060	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca1g05903	32	856	Receptor kinase-like Gene Family	AT3G51550	54.315	0.0	861

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Seca1g05903		Malectin_like	4.2e-36	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca1g05903	-		-	gmx:102659961	1446.41