Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05899 ATGGTGGTGAAAGTGAAGAGAGAGACGCTTGAAGCATGCATGACATGCCCTCTTTGCCATAAGCTATTGAGAGAAGCTACCACCATATCTCTCTGTCTTCACACGTTTTGCAGGAAGTGCATATATGAGAAGCTTTCAGATGAGGAGATGGATTGCTGTCCAGTATGCAATATTGATCTGGGCTGCCTTCCAGTGGAAAAACTCAGGCCTGACCACAATTTGCAAGATATTAGGGCCAAAATATTCCCTTTTAAACAAAAAAAGATCAATGCCCAAGAAGTTGTTCCTTTAGTATCCCTGCCAGCAAAAAGGAAGGAAAGGTCACTTTCATCATTGGTGGTTAGTGCTCCCAAAGTTTCAACACATACTAGTTTTACAGGAAAGAGAACAAAAACTGGTACAAGAAAGGCTTCTGCTTTACGTGGATGCAATTTTATCCTTGAAGAATCCATAAAGACAGAGGAAACACATGGTGAAGATAATCTGGTAAGCTCAGCCTCTGCTTCATTGCATATGATTGCTCAAAATGAAAGTCTGGACTCTTCCATAGCTGAGCCTTCTAAGAAGCATAGGCCCAATGAAGATACAGAGAACAGTATGGACCTTACAGAAGGGAAGGCTGATCTATGGACGCCCTTGAACTGTCTTGTTGAAGTAGCCAATAGAACAAAGGCCTCCAGGTCAAATTCACATGGGACCTCTCTTGCCAAATTAGAGTCTCCAACTACTCATGGTGGACAAGAGATGTCTGAAATTGTAACCAAATCAGAGCTTCCTACTTCTGTCCACAGTGGATTACACATGCCCAAAACCAAAAACAAAGATAATGGACATAAAACAAAGGTTGGAGGTGACAAGGATGGAAACACCTTGCCTTTAGGACCAGTGAAGCGAAGAAGGCTGCGTCCTGCTGGTCAGAAAAGAGTAACAGCATCCCAGATGTCTGCCTCAGCCCAAGTCATGTTAGATGCAAAAAGGAGCAGATGCAACCGGAAAAACCGTCCTATTTGGTTTTCATTAGTTGCTTCAAAAGACCAGAAAGTAGACGTTCCCTTGCCACAGATTTCAACATGTTATTTAAGAATAAAGGATGGTACTATGCCCGTGTCATTTATTCAAAAGTACCTCATGCAAAAACTTAATCTTGCCAGCGAAGCAGAGGTGGAAATAATGTGTCGGGGTCAACCTGTGCTCCCATCTTTGCAACTGCATAACTTAGTAGATCTGTGGTTCTGTACAGCATCAACCTCAAAAAAGATACCGGCATCTTGGCGCTCTGCTAAGGACTTTGTGATGGTTTTATCATATTGTCGAAAAGCCTTACCTCGTTGA 1332 0.4264 MVVKVKRETLEACMTCPLCHKLLREATTISLCLHTFCRKCIYEKLSDEEMDCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPFKQKKINAQEVVPLVSLPAKRKERSLSSLVVSAPKVSTHTSFTGKRTKTGTRKASALRGCNFILEESIKTEETHGEDNLVSSASASLHMIAQNESLDSSIAEPSKKHRPNEDTENSMDLTEGKADLWTPLNCLVEVANRTKASRSNSHGTSLAKLESPTTHGGQEMSEIVTKSELPTSVHSGLHMPKTKNKDNGHKTKVGGDKDGNTLPLGPVKRRRLRPAGQKRVTASQMSASAQVMLDAKRSRCNRKNRPIWFSLVASKDQKVDVPLPQISTCYLRIKDGTMPVSFIQKYLMQKLNLASEAEVEIMCRGQPVLPSLQLHNLVDLWFCTASTSKKIPASWRSAKDFVMVLSYCRKALPR. 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05899 443 ProSiteProfiles Zinc finger RING-type profile. 16 57 IPR001841 -
Seca1g05899 443 SUPERFAMILY RING/U-box 9 81 - -
Seca1g05899 443 MobiDBLite consensus disorder prediction 224 261 - -
Seca1g05899 443 ProSitePatterns Zinc finger RING-type signature. 32 41 IPR017907 -
Seca1g05899 443 MobiDBLite consensus disorder prediction 178 205 - -
Seca1g05899 443 Gene3D - 315 425 - -
Seca1g05899 443 CDD RING-HC_PCGF 14 57 - -
Seca1g05899 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 107 IPR013083 -
Seca1g05899 443 SMART ring_2 16 56 IPR001841 -
Seca1g05899 443 MobiDBLite consensus disorder prediction 183 202 - -
Seca1g05899 443 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 441 IPR044807 GO:0004842
Seca1g05899 443 MobiDBLite consensus disorder prediction 224 315 - -
Seca1g05899 443 MobiDBLite consensus disorder prediction 268 285 - -
Seca1g05899 443 Pfam Zinc finger, C3HC4 type (RING finger) 16 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05899 Seca-Chr1 162402188 162407550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05899 1 363 C3H Transcription Factor Family AT2G30580 46.049 1.60e-88 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05899 K16277 - gmx:100783999 657.136