Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05895 ATGACAGGTGTTATGGAGGCAGAGCGAGAGAAGTACAGTACAATCAATTTTGAACAAACCGAGTTGCGACTCGGCCTTCCTCTGAGTGGAAATGAAGGCGAGCCCGCTCTCAAGAATGCTTCTACTACTTTTACTGGAAAGAGAGGTTTTTCGGACACAGGTGTGGATTTGAAGCTTAATCTTTCCTCAAATAGTGTAATACCTGCCTCTTCCTCTTCCTCTTCCTCTTCCTCATCTATGGCTAAAGACAAGACCACTGCTGCTGCTGGTGCTGTTACTACCTCTACTGCACCTCCTCCTCTTCGCGCTAACGATCCAGCAAAGCCACCGGCAAAGGCACAAGTAGTAGGTTGGCCACCAGTTCGGTCATTCAGAAAGAACATTGTTAACATTCAAAAGAGTACTAATGAAACAGAATTAAAGGCCACCACTACCACTACCGCAGCAACCGCAACAACCAGCAGCAACGCCAACACAGCAGCAGCAGCAGCTTTCGTGAAAGTGAGCATGGACGGTGCACCCTATCTACGCAAAGTGGACTTGAAATTATACAAGAGCTACCAAGAGCTGTCAGATGCGTTGGCTAAAATGTTCAGTTCCTTCACCGTTGGGAAATGTGGATCCCAAGGCATGAAGGACTTCATGAATGAGAAGAGCAAATTGATAGATCTCCTAAATGGTTCTGATTATGTACCAACCTATGAAGACAAAGATGGAGACTGGATGCTCGTCGGTGACGTACCATGGGAGTCATTTCACAGAATGTTCGTCGAGTCATGCAAGCGCCTGCGCATAATGAAAGGATCTGAGGCAATCGGGCTAGCACCAAGAGCAGTGGAAAAGTGCAAGAACAGAACCTGA 861 0.4704 MTGVMEAEREKYSTINFEQTELRLGLPLSGNEGEPALKNASTTFTGKRGFSDTGVDLKLNLSSNSVIPASSSSSSSSSSMAKDKTTAAAGAVTTSTAPPPLRANDPAKPPAKAQVVGWPPVRSFRKNIVNIQKSTNETELKATTTTTAATATTSSNANTAAAAAFVKVSMDGAPYLRKVDLKLYKSYQELSDALAKMFSSFTVGKCGSQGMKDFMNEKSKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWESFHRMFVESCKRLRIMKGSEAIGLAPRAVEKCKNRT. 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05895 286 Gene3D - 158 280 - -
Seca1g05895 286 FunFam Auxin-responsive protein 158 278 - -
Seca1g05895 286 MobiDBLite consensus disorder prediction 65 100 - -
Seca1g05895 286 MobiDBLite consensus disorder prediction 35 49 - -
Seca1g05895 286 Pfam AUX/IAA family 19 277 IPR033389 -
Seca1g05895 286 MobiDBLite consensus disorder prediction 65 115 - -
Seca1g05895 286 ProSiteProfiles PB1 domain profile. 163 268 IPR000270 GO:0005515
Seca1g05895 286 SUPERFAMILY CAD & PB1 domains 158 267 - -
Seca1g05895 286 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 273 IPR003311 GO:0005634|GO:0006355
Seca1g05895 286 MobiDBLite consensus disorder prediction 27 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05895 Seca-Chr1 162353198 162356791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05895 167 266 B3 DNA Binding Superfamily AT3G61830 34.615 1.97e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca1g05895 AUX_IAA 6.2e-84 CL0072