Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05893 ATGGAAAGGGTTTTCTCGGTGGATGAGATATCGGAGGAGTGTTGGTCGGCGGCGAGGGATGAATCATCGTGTAAGTCAAAGTCAAAGATGAATCGAAGCGCTTCGGAATGGGCCTTTCAGCAGTTTCTAAAAGAAGCTTCATCTTCCTCTGTTGATGATGTCAAAATCAAAAAGGATCCAACCACCACAGCCACAGCCACAACACCTCTTGATTCTGAAGACTACCAAGCTATTCTCAAGACCAAGCTCAATCTCGCTTGCGCCGCCGTCGCTTTGACTCGGGGAACTTTGGTCAAAACTCAAGATCCTGCCACTCTTCCTGACAGTGGATCACAGGCATCTAATCCTTCTGAAGTTGGATCTCGGGCTACTTTAAAAGAATCCGGCTCTTCTGAAAATGATCCATCTAAACTACAAAATAAAGATGTCAAAGTACCAGTTGGGGTTCCTTCCATGCAGAGGAAACCTGCTATTGCAGTGAGGTCAACAACAAGTGGATCATCAAAAGAACAGTCAGATGACGAGGAAGCTGAGGGAGAGATTAATATGACTGGAAACATGAACCCTGCTGATGCAAAACGAGTAAGGAGGATGCTTTCTAATAGGGAGTCTGCCAGACGCTCAAGAAGAAGAAAGCAGGCTCATTTAACTGAGCTTGAGACACAAGTATCTCAATTAAGAGGTGAAAATTCTTCACTGATGAAGCGCTTGACGGATGTGAGCCAGAAATACAATGATGCTGCTGTTGACAACAGAGTATTGAAAGCTGATGTTGAAACATTAAGAGCAAAGGTGAAAATGGCTGAAGAGACTGTCAAAAGAATTACTGGGTTGAACCCAATGTTTAATGCCATGAGTGAGATATCATCAATGGGAATGCCATTATATGATGGAAGCCCTTCTGAGGCATCAGCTGATGCATCTGTTCCTGTACAAGAAGACCCAAAACATCACTATTGTCAACCAACTTCTAATAATGGTATGTCCAGTCAAGATCTGAGAGTCAACCATGGCATTTCTTCAGTTGAAAATGTGCAGCAGAACAATGCAACAGTGGTCGGTGGGAACAAGATGGGGAGAACAAGCTCCCTGCAGCGGGTGGCTAGCTTGGAACATCTTCAGAAGTGGATTCGCGGTGGTGCAGCCTTGTTTGGATTGGGCGTACCCGAACTCGTTGTTATTGCCGGAGTCGCTGCCCTCGTTTTCGGACCTAAGAAGTTGCCGGAAGTGGGTCGCTCCATCGGCAAAACTGTTAAGAGCTTCCAACAGGCAGCAAAGGAGTTTGAGTCCGAGCTTAAAAAGGAACCTGCATCCATAGAAGAGGGGGCATCTGAGGAACCTGTTGCTGTGAGCGAACAGGAGAAACAAGACGTTGAGGTGTCTAGTTCTAAGGAGAGTGTATGA 1404 0.4587 MERVFSVDEISEECWSAARDESSCKSKSKMNRSASEWAFQQFLKEASSSSVDDVKIKKDPTTTATATTPLDSEDYQAILKTKLNLACAAVALTRGTLVKTQDPATLPDSGSQASNPSEVGSRATLKESGSSENDPSKLQNKDVKVPVGVPSMQRKPAIAVRSTTSGSSKEQSDDEEAEGEINMTGNMNPADAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRGENSSLMKRLTDVSQKYNDAAVDNRVLKADVETLRAKVKMAEETVKRITGLNPMFNAMSEISSMGMPLYDGSPSEASADASVPVQEDPKHHYCQPTSNNGMSSQDLRVNHGISSVENVQQNNATVVGGNKMGRTSSLQRVASLEHLQKWIRGGAALFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGKTVKSFQQAAKEFESELKKEPASIEEGASEEPVAVSEQEKQDVEVSSSKESV. 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05893 467 Pfam bZIP transcription factor 192 244 IPR004827 GO:0003700|GO:0006355
Seca1g05893 467 MobiDBLite consensus disorder prediction 46 70 - -
Seca1g05893 467 SUPERFAMILY Leucine zipper domain 193 243 IPR046347 GO:0003700|GO:0006355
Seca1g05893 467 Coils Coil 251 271 - -
Seca1g05893 467 Pfam mttA/Hcf106 family 386 435 IPR003369 GO:0015031
Seca1g05893 467 Hamap Sec-independent protein translocase protein TatA [tatA]. 383 466 IPR006312 GO:0016020|GO:0043953
Seca1g05893 467 MobiDBLite consensus disorder prediction 101 188 - -
Seca1g05893 467 Pfam Basic leucine-zipper C terminal 260 381 IPR020983 -
Seca1g05893 467 Coils Coil 202 236 - -
Seca1g05893 467 CDD bZIP_plant_GBF1 194 245 IPR045314 GO:0003700|GO:0006355
Seca1g05893 467 MobiDBLite consensus disorder prediction 448 467 - -
Seca1g05893 467 Gene3D - 385 435 - -
Seca1g05893 467 Gene3D - 192 246 - -
Seca1g05893 467 SMART brlzneu 189 253 IPR004827 GO:0003700|GO:0006355
Seca1g05893 467 NCBIfam twin-arginine translocase TatA/TatE family subunit 385 431 IPR006312 GO:0016020|GO:0043953
Seca1g05893 467 FunFam Sec-independent protein translocase protein TATB, chloroplastic 383 432 - -
Seca1g05893 467 FunFam BZIP transcription factor 191 242 - -
Seca1g05893 467 PRINTS Bacterial sec-independent translocation TatB protein signature 403 422 - -
Seca1g05893 467 PRINTS Bacterial sec-independent translocation TatB protein signature 383 403 - -
Seca1g05893 467 PANTHER BASIC LEUCINE ZIPPER 63 1 380 - -
Seca1g05893 467 MobiDBLite consensus disorder prediction 101 136 - -
Seca1g05893 467 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 191 245 IPR004827 GO:0003700|GO:0006355
Seca1g05893 467 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 196 211 IPR004827 GO:0003700|GO:0006355
Seca1g05893 467 MobiDBLite consensus disorder prediction 432 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05893 Seca-Chr1 162321995 162330347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05893 1 282 bZIP Transcription Factor Family AT4G02640 39.450 1.54e-48 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca1g05893 bZIP_C 2.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05893 K25784 - gmx:778137 493.812