Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05890 ATGGAGCTTCCTCCGAATCTGTTGACGGACGAGGCGAGTCCTGAGTGGATGAACAAAGGGGACAACGCATGGCAACTAACGGCAGCCACATTGGTGGGCCTCCAAAGCATTCCTGGGCTTGTCATTCTCTATGGAAGCCTTGTTAAAAAGACATGGGCCATTAACTCTGCTTTCATGGCCTTCTATGCCTTCGCTGCCGTTCTCCTTTGCTGGGTTGCGTGGGCTTTCCGCATGTCATTCGGCGACAAATTGGCCTTCTTTTTGGGGAAACCCGGCGTTGCATTGGATGAGAAATTCCTTTTAGGGCAGGCTTTTTTGGGGCTCTTTCCTACTGCTACCATGGTCTTTTTTCAAGGTGTGTTTGCAGGGATCACTTTGATTTTAATAGCAGGTGCGTTATTGGGGAGAATGAATATTCGTGCGTGGATGCTGTTTGTGCCACTTTGGGTTACTTTCTCATACAGTGTCACTGCCTTCAGCATTTGGTGCCCCGATGGATGGTTGGCAAAGCTTGGGGTTATTGATTTTGCTGGGGGTTATGTTATTCACCTCTCTGCAGGAGTTGCTGGTGTCACTGCAGCTTACTGGGTAGGTCCACGATCAGAGAAAGACAGAGAAAATTTTGCATCAAACAACATGATAGTGGTGCTTGCAGGCGCAGGCCTGCTTTGGATGGGTTGGAGTGGATTCAACGGTGGAGCTCCGTTCGTGGCCAGCACAGTGGCATCTCTTGCTGTCCTAAACACACACGTGTGTACTTCCGCTAGCATCGTCGTTTGGGTCCTACTCGATACTTTCTGCTTCGGCAAACCTACAGTGTTCGGTGCCGTACAAGGCATGATCACTGGTCTCGTTTGCATCACGCCTGCCGCAGGAGTTGTGCAGGGGTGGGCAGCGATTTTGATGGGTTTGATATCAGGAAGTGTTCCATGGTACACAATGATGGTACTCCACAATAAGGTTCCTTTCTTAAAGCAAATAGATGACCCCATGGCGGTGTTTCACACGCACGCCATCGCGGGTGCTCTTGGCGGCATTCTCACTGGCTTCTTTGCTGTGCCTAAACTGTGCCGTCTCTTCTACATGGTTCCCGATTGGGAAAAATACATTGGCCTCTTCTATGGCCTCCAGAATGGTGCCACTCATGCGGGTTTAAGACAGATGGCAATCCAAGTTGGAGCCATTGCTTTTGTGATTTGCTTCAATTTTGTTATGACCAGCTTGATTTGCTTGCTTGTGGGTCTCATAGTACCACTTAGGCTTAATACTGATGCATTGCAAATGGGTGACAAGGCAATACATGGAGAGGAGGCTTTTGCTTTGCATGGTGAGACTACAAAATTTGAGAACCTGAAGCACAATAAGATTTTTGATACTCAAGATTTTTCATTCGTTAAGGAGTCAAGGTCATTAGGTCAGCTTCAAATGGTATGA 1434 0.4812 MELPPNLLTDEASPEWMNKGDNAWQLTAATLVGLQSIPGLVILYGSLVKKTWAINSAFMAFYAFAAVLLCWVAWAFRMSFGDKLAFFLGKPGVALDEKFLLGQAFLGLFPTATMVFFQGVFAGITLILIAGALLGRMNIRAWMLFVPLWVTFSYSVTAFSIWCPDGWLAKLGVIDFAGGYVIHLSAGVAGVTAAYWVGPRSEKDRENFASNNMIVVLAGAGLLWMGWSGFNGGAPFVASTVASLAVLNTHVCTSASIVVWVLLDTFCFGKPTVFGAVQGMITGLVCITPAAGVVQGWAAILMGLISGSVPWYTMMVLHNKVPFLKQIDDPMAVFHTHAIAGALGGILTGFFAVPKLCRLFYMVPDWEKYIGLFYGLQNGATHAGLRQMAIQVGAIAFVICFNFVMTSLICLLVGLIVPLRLNTDALQMGDKAIHGEEAFALHGETTKFENLKHNKIFDTQDFSFVKESRSLGQLQMV. 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05890 477 Pfam Ammonium Transporter Family 23 438 IPR024041 GO:0008519|GO:0016020|GO:0072488
Seca1g05890 477 SUPERFAMILY Ammonium transporter 16 421 - -
Seca1g05890 477 ProSitePatterns Ammonium transporters signature. 175 200 IPR018047 GO:0008519|GO:0016020|GO:0072488
Seca1g05890 477 Gene3D Ammonium transporter AmtB like domains 6 457 IPR029020 -
Seca1g05890 477 FunFam Ammonium transporter 6 442 - -
Seca1g05890 477 PRINTS Rhesus blood group protein signature 118 134 IPR002229 GO:0005886
Seca1g05890 477 PRINTS Rhesus blood group protein signature 214 232 IPR002229 GO:0005886
Seca1g05890 477 PRINTS Rhesus blood group protein signature 245 267 IPR002229 GO:0005886
Seca1g05890 477 PRINTS Rhesus blood group protein signature 300 318 IPR002229 GO:0005886
Seca1g05890 477 PANTHER AMMONIUM TRANSPORTER MEP2 6 450 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05890 Seca-Chr1 162304572 162307349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05890 112 471 Inorganic Solute Cotransporters AT2G38290 51.923 9.44e-125 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05890 K03320 - gmx:100782944 850.506