LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca1g05886	ATGGTCTCATATAAAGCAAAAGTAAGACTCTCTCTGCTCTGCAAAAGCACTTGCTCTGCCCTGAACTCCGAAGCCGCATCCAAAATCCCTAGAGCATCAACCATGTCAAAGAGAAAGGTTAGAGAGCCCAAGGAGGAAAATGTCACCCTTGGTCCTGCTGTAAGAGACGGTGAGCATGTTTTTGGTGTCGCTCGCATTTTTGCATCATTTAATGACACCTTCATTCATGTGACTGATTTGTCTGGAAGGGAAACACTTGTCCGCATTACTGGTGGAATGAAGGTTAAAGCTGACAGAGATGAGTCATCTCCATATGCTGCTATGCTTGCAGCACAAGATGTTGCTGCTAGATGCAAGGAGTTGGGCATAACTGCTCTTCATATCAAGCTCCGTGCAACAGGAGGAAACAAGACAAAAACACCTGGCCCTGGTGCTCAGTCTGCTCTTCGTGCCCTGGCTCGGTCTGGAATGAAAATTGGTCGCATAGAGGATGTGACCCCAATTCCTTCAGATAGCACACGTAGAAAGAGTGGTAGAAGGGGTAGAAGGCTTTGA	555	0.4703	MVSYKAKVRLSLLCKSTCSALNSEAASKIPRASTMSKRKVREPKEENVTLGPAVRDGEHVFGVARIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAARCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKSGRRGRRL.	185

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca1g05886	184	PANTHER	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	37	177	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Seca1g05886	184	MobiDBLite	consensus disorder prediction	164	184	-	-
	Seca1g05886	184	Pfam	Ribosomal protein S11	62	180	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Seca1g05886	184	PIRSF	RPS11p_RPS11a_RPS14e_RPS11o	32	181	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Seca1g05886	184	Hamap	30S ribosomal protein S11 [rpsK].	28	181	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Seca1g05886	184	Gene3D	Ribosomal protein S11	35	184	IPR036967	GO:0003735\|GO:0005840\|GO:0006412
	Seca1g05886	184	SUPERFAMILY	Translational machinery components	57	182	-	-
	Seca1g05886	184	FunFam	40S ribosomal protein S14	35	184	-	-
	Seca1g05886	184	ProSitePatterns	Ribosomal protein S11 signature.	149	171	IPR018102	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca1g05886	Seca-Chr1	162289922	162291562	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca1g05886	35	173	Cytoplasmic Ribosomal Protein Gene Family	AT3G52580	91.367	2.92e-93	266

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca1g05886	K02955		-	gmx:100786325	266.929