Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05880 ATGGATATTAAATATAACATCGTCAAATATCATATACACAGAGATATTGTTCATTTTGTTTCTCCTCCAACCGTCCGTCACTTCACTCGCATAATAATCTGGTGGGTAGAGTCTGCCAAACATAACATAATGTCGAGTTCAAGGGTAACCCTGCACTCAACACTAACGGCCGTTTCCAGTAAACCCGTTAGGTCGGGTAAGACCCATACCCTATCGGCGTTGGATCATGCCATGGGTTTTCATACCCTTCACATAATATTCTACTACAAGAATGAGGGTAACAACTTGTTTGAGTCCTTTGATTTGGACCCGTTGAGGGAATCATTGTCTGAGGTTCTTACAATGTACCCGACTATGACGGGTCGGTTAGCCCGAGGGGTGGATGGTAACTGGGAAGTGAGGTGCAATGATGCGGGTGTTCGGGTCATAATGGCAAATGTGGATACCACACTCAAGGAGTGGCTCTCATCTGCTTCTGGATGCGAAGAGGAACATCTAATTGCTTGGGATGAAATGCCTCATGACCCTAACACATGGTCACCCTTTCGAATTCAGATAAACAGCTTCAAAGAAGGAGGTGTTGCAATAGGACTAAGTTGTAGCCACATGCTTGCTGATCTAACTTGTGCTGCATCATTCTTCAAATCATGGACAGAAACTCACTGCCACTTACCTATTACCCACCCTCCTTCCTTCACTCCAATTTGTGCTTCACCACTTCCAAACTCGGATACAGTGTCTCTCCCTCTCTATGCAACAAAAGCACAAATAATGGCCACAGGCACTTTCAAATTTTCCAGTTCAATTATGAAGCAATGCCTCTCCAAAGTCCATGACACATGCCCCAATGCCACCCCATTTGATTTCCTCTCTGCTCTGTTTTGGACTCGCATTGCTCGCTTGAAGCCCCCAAAAAATCAGAACCAAACTCACTCTCTATCAATCTGCACTGACTTCAGGAGACTCATGAAACCACCCCTCCCAATTGGGTATTTCGGAAATGCGTTACATTTTTCAATGATTTCAGTAAAAGTGGAAGACATAGAGAGTGATCAATTAGGAGGCATAGCTAGTAAAGTGCATGACCACTTGGTAGGGCTAGTAGAGGAAGAAATAAGGTCTGCTATGGAATGGTTAGAGTCAGAAAAGGAAAGAGAGGGAGGGAAATTCAGATATGGGAGTGAGTTAACTTGTGTTTGCATGGAGCACATGGTGATTTCTTCTGAACAGTCATTGCTATATTCAGCAATGTTTAGCAGTAATGAGAAGCCAGAACATGTGTCATGTCATGTGGGGAATGTGGATAGTGAAGGGTTGATTATGGTGATGCCTTCCTCAGAAGAAGGACTTGCAAGAACGGTGATGGTGACGCTGCCACAGGAAGAATTAGCTAAAGTAAGCAAGGATCAAGCAATATTGCAGCTGGAGCCAACAATGATCCTTGCTGGTTGTGGGGTTGAGGAAAATCATTGA 1473 0.4413 MDIKYNIVKYHIHRDIVHFVSPPTVRHFTRIIIWWVESAKHNIMSSSRVTLHSTLTAVSSKPVRSGKTHTLSALDHAMGFHTLHIIFYYKNEGNNLFESFDLDPLRESLSEVLTMYPTMTGRLARGVDGNWEVRCNDAGVRVIMANVDTTLKEWLSSASGCEEEHLIAWDEMPHDPNTWSPFRIQINSFKEGGVAIGLSCSHMLADLTCAASFFKSWTETHCHLPITHPPSFTPICASPLPNSDTVSLPLYATKAQIMATGTFKFSSSIMKQCLSKVHDTCPNATPFDFLSALFWTRIARLKPPKNQNQTHSLSICTDFRRLMKPPLPIGYFGNALHFSMISVKVEDIESDQLGGIASKVHDHLVGLVEEEIRSAMEWLESEKEREGGKFRYGSELTCVCMEHMVISSEQSLLYSAMFSSNEKPEHVSCHVGNVDSEGLIMVMPSSEEGLARTVMVTLPQEELAKVSKDQAILQLEPTMILAGCGVEENH. 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05880 490 Gene3D - 43 248 IPR023213 -
Seca1g05880 490 Gene3D - 249 468 IPR023213 -
Seca1g05880 490 SUPERFAMILY CoA-dependent acyltransferases 70 230 - -
Seca1g05880 490 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 67 460 - -
Seca1g05880 490 Pfam Transferase family 49 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05880 Seca-Chr1 162226462 162229349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05880 80 468 Monolignol Biosynthesis Gene Families AT5G48930 24.755 6.30e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05880 - - lja:Lj1g3v4958860.1 639.417