Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05878 ATGGAGAGCAAAGAGCACTCTAAAGGCCATATAGCTCAAGAATTCTTCAAAGTTTTCATGCAAGAGACATCTCCCCACTTGAGCATACCAAAGTCTTTCAATAAGTTCTTCAATGGAACCACACCATGCAAGGTCACTCTTAAGGATCAAGACAGAAATCCTTGGAATATTTGTTTGGAGAAAATCGACGATCGCTTGGTTTTTAAAAACGGGTGGCGGCAATTTGCCAGGGATAAGTGTTTAGAAGAAAGAGACTTTTTGGTTTTTGAGTATGATGGCAAGTCAACGTTTTATGTGAAGATCTTTTCCAAAAGTGGATGCAGGATAGAAGCTGAAAATCTTGGAAAAACTGTTCCCATTGTGATTTTGGAAGAAAATTCTGCTCAGAATTGTACAAAAGTTCAGCGGGGTTATAAAAGGAAACATCCACCAACACCCTCCAAAATAAATGACAACAAATCAGATTCAGAGGCTCCATCTCAGAGAAAACCAAAAAGAACTTATGAAGAAAATGGTAACCACGTTGAGAGGAAGGCACTTGGTCCATCTAGGAGAAAACCAAAAAGAATTTACGAAGAAAATGGTAATCACGTTGAGAAGAAGGCACTTGGTCCGGCAAAGTGTGTTCCCCCAAAGAACACTCATTTTGAGGTGCATTTTTCCCGCTGGAAACTTAGTAAAATGGAAGTTCCTAGAAGAATACTGAAGCAATTGAACATCAACCAGATATCAAAGATAAGTCTGAGAGATGAGAATAACAAACTGTGGCCGGTGGCTATCAGTAAAAAGCAGCAGGGCCGTCATTTTTTTGCCGACGGGTGGTATGATTTTCGGCAAGCTCACAATATTAAAGAAGGCCACCGTTGTGATTTTCAGTTTGTTATTGGCAAAGCAAATGTGGTCAAAGAATTGCGTGTGCGTGTGCTTCCACCTTCAAAATCAAAATGCCCATAG 954 0.4015 MESKEHSKGHIAQEFFKVFMQETSPHLSIPKSFNKFFNGTTPCKVTLKDQDRNPWNICLEKIDDRLVFKNGWRQFARDKCLEERDFLVFEYDGKSTFYVKIFSKSGCRIEAENLGKTVPIVILEENSAQNCTKVQRGYKRKHPPTPSKINDNKSDSEAPSQRKPKRTYEENGNHVERKALGPSRRKPKRIYEENGNHVEKKALGPAKCVPPKNTHFEVHFSRWKLSKMEVPRRILKQLNINQISKISLRDENNKLWPVAISKKQQGRHFFADGWYDFRQAHNIKEGHRCDFQFVIGKANVVKELRVRVLPPSKSKCP. 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05878 317 PANTHER B3 DOMAIN-CONTAINING 219 296 - -
Seca1g05878 317 MobiDBLite consensus disorder prediction 133 192 - -
Seca1g05878 317 SMART B3_2 216 312 IPR003340 GO:0003677
Seca1g05878 317 SMART B3_2 15 105 IPR003340 GO:0003677
Seca1g05878 317 SUPERFAMILY DNA-binding pseudobarrel domain 15 107 IPR015300 -
Seca1g05878 317 CDD B3_DNA 224 310 IPR003340 GO:0003677
Seca1g05878 317 ProSiteProfiles B3 DNA-binding domain profile. 12 105 IPR003340 GO:0003677
Seca1g05878 317 CDD B3_DNA 15 103 IPR003340 GO:0003677
Seca1g05878 317 Pfam B3 DNA binding domain 224 296 IPR003340 GO:0003677
Seca1g05878 317 Pfam B3 DNA binding domain 15 104 IPR003340 GO:0003677
Seca1g05878 317 Gene3D - 8 107 IPR015300 -
Seca1g05878 317 Gene3D - 210 311 IPR015300 -
Seca1g05878 317 SUPERFAMILY DNA-binding pseudobarrel domain 210 294 IPR015300 -
Seca1g05878 317 ProSiteProfiles B3 DNA-binding domain profile. 213 312 IPR003340 GO:0003677
Seca1g05878 317 MobiDBLite consensus disorder prediction 155 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05878 Seca-Chr1 162207363 162211495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05878 14 315 B3 DNA Binding Superfamily AT5G66980 29.969 6.79e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca1g05878 B3 5e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05878 - - ccaj:109795839 289.271