Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05876 ATGGGGAAGGCAGGCAAATGGATTAGAAACTTACTTCTAGGGAAAAAAGAAGAGAAATTCAAGAAGATTGATGCATTCTGCCCCGAAAATAAGACTGCTACCAAAGTGAAGCGCAGATGGAGCTTTGGAAAACTAGCAGGTGGAAGAATAACAGGCAAGGTAGCAGAAAATCATAAATTTTCCAGATCTTTTGACTCAGGTGACTCTGCAAAATTGCAAATACAAGTCTTGTTGGAAACTAAGAATCCAAGGTATCTTCCAACATCACTTGCAAAGGTTTATGAAGACACTGAATTTGAAACAGCAGCTGCTACAAGGATTCAAGCTGCGTTTCGCTCATATTTGGTAGCAAGGAAAGCATTACATGCTTTAAGGGGATTAGTCAAGATACAGGCACTGGTCAGGGGCCATCTTGTAAGGAAACAAACAACTGCCACACTGCGTGGCATGCATGCGTTGATGGCTATACAAGTTAGAGCCCGAATTCAGAGAATTCAGATGGTAGAGGAAGCAAATCTCCTCGGAAAACAGGCTCCCCAACATAGAGAAATTCCACACATGAAAGGTCTCATATCAGAAGAAAATCAAGATTCTGAGGATATGAGTCTGAAAGACATTTTGGGGGTTTTGAAAAGTAGAAGTGGCCCTCTAGATGGTTCGCATGTTAAGAGCAGAAAGTATGATTCCATGGCTTTCTATTCGAAGCATCTGTCAAGTTCGAAACGAGAAAATCAACACAAGCAGAACACTTTAGTCACAGCACCAAACAGCCCAGCACACTACAGGGACATGTCTGAATTTAACCCAACAACAATGGCGTTATCAACTTCTCAGCGCCACCTAGTGCCTCACCGCCAATCATGGTCACCAAATTACATGAATAAGACTGAATCTTCAAGGGCAAAAGCAAGGTCTCGGAGTGAACCAAAACAACGACCCAAACAGGGAATGAAGCACAAAAGCAAGTTTGTAGAATCTCCATTGCATGGTCCAAGGCAAAACCTGTTCTCAAACTCATCACGGTTCGATCATGGAAGCCTGGACCATTGGGTTATTAATCTTCATGGATCAATGAAGGAAAGCAAGCGTGATTCTTTTGGCAGCAGCACGATGACCAGTGATTCCTACTACTGA 1134 0.4277 MGKAGKWIRNLLLGKKEEKFKKIDAFCPENKTATKVKRRWSFGKLAGGRITGKVAENHKFSRSFDSGDSAKLQIQVLLETKNPRYLPTSLAKVYEDTEFETAAATRIQAAFRSYLVARKALHALRGLVKIQALVRGHLVRKQTTATLRGMHALMAIQVRARIQRIQMVEEANLLGKQAPQHREIPHMKGLISEENQDSEDMSLKDILGVLKSRSGPLDGSHVKSRKYDSMAFYSKHLSSSKRENQHKQNTLVTAPNSPAHYRDMSEFNPTTMALSTSQRHLVPHRQSWSPNYMNKTESSRAKARSRSEPKQRPKQGMKHKSKFVESPLHGPRQNLFSNSSRFDHGSLDHWVINLHGSMKESKRDSFGSSTMTSDSYY. 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05876 377 Pfam IQ calmodulin-binding motif 101 119 IPR000048 GO:0005515
Seca1g05876 377 Pfam IQ calmodulin-binding motif 128 142 IPR000048 GO:0005515
Seca1g05876 377 ProSiteProfiles IQ motif profile. 100 129 IPR000048 GO:0005515
Seca1g05876 377 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 143 IPR027417 -
Seca1g05876 377 MobiDBLite consensus disorder prediction 274 298 - -
Seca1g05876 377 Pfam Protein of unknown function (DUF4005) 257 320 IPR025064 -
Seca1g05876 377 MobiDBLite consensus disorder prediction 274 340 - -
Seca1g05876 377 MobiDBLite consensus disorder prediction 237 256 - -
Seca1g05876 377 Gene3D - 100 155 - -
Seca1g05876 377 PANTHER IQ-DOMAIN 5-RELATED 1 334 - -
Seca1g05876 377 MobiDBLite consensus disorder prediction 237 259 - -
Seca1g05876 377 MobiDBLite consensus disorder prediction 299 326 - -
Seca1g05876 377 SMART iq_5 99 121 IPR000048 GO:0005515
Seca1g05876 377 SMART iq_5 122 144 IPR000048 GO:0005515
Seca1g05876 377 ProSiteProfiles IQ motif profile. 125 152 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05876 Seca-Chr1 162191227 162193816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05876 1 346 IQD Protein Family AT4G14750 35.493 2.81e-35 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05876 - - gmx:100781320 512.686