Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05875 ATGGAGCAGTATGAAATACTTGAGCAAATTGGAAAAGGTGCTTTTGGTTCTGCTCTTCTTGTGAAGCTTCATATGTGCCTATTATCTTTTTCTTACGAATTATATAGGTATGTGCTGAAGAAGATTCGCCTTGCCCGCCAAACTGAGCGTTCTCGTAGGTCTGCACACCAGGAGATGGAGCTAATCTCCAAATTTAGAAATCCATTTATTGTGGAGTATAAAGATTCATGGGTTGAAAAGGGTTGCTATGTGTGCATTATTATAGGTTATTGTGAGGGTGGAGATATGGCGGAAGCTATAAAGAAAGCTAAAGGTGTTATGTTTCCTGAGGAGAAACTGTGTAAGTGGCTTGTTCAACTTCTTATGGCACTTGATTACTTGCACATGAACCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCATGACATACGTCTTGCTATCATTGATGAATCAGGTGATTTTGGACTTGCCAAAATGTTGACTTCAGATGATCTCGCTTCCTCTGTTGTGGGAACACCTAGCTACATGTGCCCAGAACTCCTTGCTGATATACCTTATGGTTCTAAATCAGATATTTGGTCCTTGGGATGTTGTATATATGAAATGACCTCTCATAAGCCTGCGTTCAAAGCATTTGATATACAATCCCTGATTAACAAGATTAATAAGTCCATAGTGGCTCCGTTGCCAACAAAATATTCTGTTGCATTTCGAGGTCTTGTTAAAAGCATGCTGCGGAAAAATCCAGAGCTTAGGCCTAGTGCTGCTGAGCTACTTGGGCACCCACATCTTCAACCTCATGTGCTTAAGATCCATCTCAAAATCAATAACCCCAGGCGAAGTACATTGCCAGGACATTGGCCAGAATCCGACTACAGGAAGAAAACTAGATTTTTGAAGCCAGAAGGCCATCCTGTTTCTATCTCTGGGGATAAGTGGCACTCTTTCAGCAATGATCGCACTTTAAATCCTAGTGTATCTGGAGCAGAGCAAGATTCTCTGTGCTCTACCCTAGAAATAGATTGCACTCCTGAGAATCAAAGATTGGCTGAACTGTGTATTGGAGATAGCCATGACGTGAAGTCAATCTATAAACCAGCTGTTTCCAGAACTTCAAGTATTGCCAAGACTCGAAGACTCACTTCATCAAAAGCTTCTACCACCCCCAAGAAATCAATGGAACCCTCAAAGTCCCGTAAGGAGCTTCCTGTTTCACACAATACCAAACAATCTGTCCCTACAACTCGCAGAGCATCATTGCCATTGCCAAGAAGTTGTGCCATTCAGCAGCCTCCTCGTAGGCCCAGTATCGGTTTACTTGGCCGTGTAAATTCGCCCAATATTTCAGTTAACTCTCCCCGTATTGATAAGATAGCAGAATTCCCATTAGCATCCTATGAAGATCAATTGTTTCCCATCAATAGATCTTCACCAACCTCTGTGCAGGGTTCCTCAGGCTCCCCTCCTTGTGGCAATGATTCAACTTTGATAGACAAATGCACAGTCAAGGTATGTGACAGAGCCTACATCAGACCTAGTTGTACGGATGCTTGGCAGGGAATCAAGCGTAGCATGATCAAACAAAATGACGATGGCAAAAGTGGCTCATCTGATCAAAATGCAACTGCTGGAGCATCAAGCAACAACTCCTCAGACTTGCACCGCCGACAGTTTGATACTTCATCATTCCAACAAAGGGCTGAAGCCTTGGAGGGGTTGCTTGAATTTAGTGCAAGATTACTACATCAGGAAAGGTATGATGAACTTGGGGTTTTGTTAAAACCGTTTGGGCCTGGGAAAGCTTCCCCAAGGGAAACAGCTATTTGGTTGAGCAAGAGTTTCAAAGAAAACACTTTCAACCGGGAACAATCTGCCTAA 1899 0.426 MEQYEILEQIGKGAFGSALLVKLHMCLLSFSYELYRYVLKKIRLARQTERSRRSAHQEMELISKFRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKAKGVMFPEEKLCKWLVQLLMALDYLHMNHILHRDVKCSNIFLTKDHDIRLAIIDESGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSHKPAFKAFDIQSLINKINKSIVAPLPTKYSVAFRGLVKSMLRKNPELRPSAAELLGHPHLQPHVLKIHLKINNPRRSTLPGHWPESDYRKKTRFLKPEGHPVSISGDKWHSFSNDRTLNPSVSGAEQDSLCSTLEIDCTPENQRLAELCIGDSHDVKSIYKPAVSRTSSIAKTRRLTSSKASTTPKKSMEPSKSRKELPVSHNTKQSVPTTRRASLPLPRSCAIQQPPRRPSIGLLGRVNSPNISVNSPRIDKIAEFPLASYEDQLFPINRSSPTSVQGSSGSPPCGNDSTLIDKCTVKVCDRAYIRPSCTDAWQGIKRSMIKQNDDGKSGSSDQNATAGASSNNSSDLHRRQFDTSSFQQRAEALEGLLEFSARLLHQERYDELGVLLKPFGPGKASPRETAIWLSKSFKENTFNREQSA. 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05875 632 MobiDBLite consensus disorder prediction 378 428 - -
Seca1g05875 632 MobiDBLite consensus disorder prediction 534 562 - -
Seca1g05875 632 Pfam Protein kinase domain 4 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05875 632 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Seca1g05875 632 FunFam Serine/threonine-protein kinase Nek2 91 287 - -
Seca1g05875 632 Gene3D Transferase(Phosphotransferase) domain 1 91 286 - -
Seca1g05875 632 ProSiteProfiles Protein kinase domain profile. 4 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05875 632 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 582 - -
Seca1g05875 632 CDD STKc_Nek 3 271 - -
Seca1g05875 632 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Seca1g05875 632 MobiDBLite consensus disorder prediction 378 399 - -
Seca1g05875 632 SMART serkin_6 4 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05875 632 ProSitePatterns Protein kinases ATP-binding region signature. 10 40 IPR017441 GO:0005524
Seca1g05875 632 SUPERFAMILY Protein kinase-like (PK-like) 1 272 IPR011009 -
Seca1g05875 632 MobiDBLite consensus disorder prediction 537 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05875 Seca-Chr1 162185844 162191457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05875 3 269 MAP Kinase Kinase Kinase AT3G13530 31.365 5.13e-32 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Seca1g05875 Pkinase 1.3e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05875 K08857 - gmx:100796019 1042.34