Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05874 ATGATGGCCATGAAAACCCTAGGAGAATCCGATGTGGGCATCCTCAGCTACATTTCCAACCTTCCTGGCTTCAGTGGAATTTTAAAGCAAAGGTATTCTGATTTTATTGTGCACGAAGTAGACATTGATGGAAACACTGTTCAATTGTCCTCACTTGATGCCCCTGCACCTGCAGAAGAGTTGCCAAAGTGCTCATTTCAGAGTGTTCAGGAAAATGAAACAAACGCATCTGACACTACAACTACAATTATAAGTTATGCCTCTCAAATTGAATCTTTGAAGTCTCTTGTTGGGGATTCTGATGCGGCCCGTTTGGAAGAGTTTATTAATCAAATTAGTGCTGGTGAAGACAGTGTTTCTCCTATTGTTCTTTCTCCGGATTCGGATAAATCTCATCGAACGGCAGTGCATAATTTCTTCAAGGAAAACTTCAAGTTCCTGGTCACTGACACCATTGATGGACCAGATGCTTTGTCAAAATCCATCCGTGTGAGATTGAATTCTAGAGGCAAAAACTCCAAGAAACGCAAAGAAAGAGATGATAAGCCTTTTGATAGCAGGGGTTCAGAAAATTGGCCAGAAAATGTTGGCAAGTTCCTTAGGTTTCATCTTTATAAGGAGAACAAAGATACCCAGGAAGCTTTGGGGGTGATTGGAAATATGCTTGGCATCCAGTCGAGATCATTTGGATTTGCGGGTACAAAGGATAAACGTGCTGTCTCAACCCAAAGGGTTACTGTTTATAAGCAGCAAGCAAGTAGGCTGGCTTCTCTTAATGAGAGGCTGTTTGGTATTAAAGTTGGCGATTTCTGTTATGTTAAGGAAGGACTTTGTCTTGGCCAGCTCTCAGGAAACCAATTTACAATAACATTGCGAGGTATTGTTGCAGATTCTGAAGATATCCTTAAAGCAGCCGCAGATGCCTTAGGAAGGCATGGCTTCATCAACTACTTTGGTTTACAACGCTTCGGAAGTGGTTCTGTGCCAACTCACCTTATTGGAGCTGCATTACTTCAAGGGAAATGGAAACTTGCTGCACGCAAGTACTATAAAGATAGTAATGATGTTGCTGGGACACTTAAGCAGTTGCCTCGATATTTAGTTGCTGAAAGGGCTGTGCTGCAAAGTTTAAAAAAGTCTCCTCAAAACTACTTGCAGGCTTTGAAAACTATTCCACGGACCTTGAGAATGATGTATGTGCATAGTTACCAAAGCTATCTGTGGAACCATGCGGCAAGTACAAGGGTGCAAAAATATGGGACTAAACTAGTATTAGGAGACTTGGTATATTGTAAAGAAAATCCTTCTGGAAAAAATACAGGGCTTGTTGGATCTAAATGTGATGATAACTGCGGTGATAGGTATGATTCTAATAATGAAGATGAAGTCTCTGGAGATACTGATGAAGAAAGATATGGTGATGTCAAGGTTGTGAATGCTGAAGACCTTAATTCAGGATATTATACAATTGATGATATCATCCTTCCTATGCCAGGTTCACGGGTAATTTATCCAACCAATGACATTGCCGAAGTTTATCACCATTTGGCAAATAAAGATGGAATCAATTTAACTAAGAGCGTGCATAATATGAAGGAATTCTCGATAACTAGTATGACTGGAAGTTACAGGAGGGTTTTTCAGAAACCAATTAACTTTGAGTGGGAATTACTTACATATACTGATAGTAATAAACCATTGGTAGAGACAGATTTAGACAAAATTGGCAAGTCTAAACCTAGAAACAATGTCAAACCTGTGGGTGCACCAAATGGGAAAAAGGAAGAAGCCATTGATTGCACGAGACAATTAGAGTGCTCTGATGATGGTGCAAAGGAAGTAAAATTGCCACCTGATGAATCTGTCAGTGACCCCAGCTCTCAAGATTCCCATATTGCTCTCAAATTGAGCTTCATTCTTCCTGCTTCATGTTATGCAACAATGGCGATAAGAGAGCTGCTGAAGACTTCAACATCTAGACAATTACCACCAGAATTGCTTGATTCCTGGACCAACGATGAAGTCCTTGCACTCTTGAGGATCAGATCTACCATGGAAAATTGGTTCCCTCAGCTCACTTGGGAACATGTCTCAAGGAAGCTAGCAGAGCTTGGGTTTAAGAAGAGTGCTGAGAAATGCAAGGAGAAGTTTGAAGAAGAAACCAGATATTTCAACAACTTGGGCAAGACTAGTTACCGTTTTGTTAGCGAGCTTGAAGAGCTTTATCATCATCAAAACCCTCATGATCAAGTTGTTACTGAAAAGACAATGGAAGGAGACAGCATGGGCCACACATTGGAAGAAAATTCCACAGATATTAATAAGATGATGGTGGTTGAAAAGTCAAAGAAGAGGAAGAGACGTGATAAGTTTGAAATGTTGAAAGGTTTTTGTGAGAGCATTGTGAACAAGATGATGGCTCAACAAGAAGAAATACACAATAAGCTTCTCCATGAGATGGTCAAGAGAGATGAAGAGAAGCTTGCAAGAGAGGAAGCTTGGAAAAAACAAGAGATTGATAGGTTCAACAAAGAGCTTGAGATTATGGCACAAGAACAAGCTATTGCTAGTGATAGGCATGCCACAATCATTCAATTCTTGAACAAATATCTATCATCTTCAACATCAACAACAACTTCTTCCCCTCCCAAGTGCAAAACAAAAGGAAATTCTTCCCCAATATTAACACACTTGCAAAACCCTAATCCTTCTAATTTGGTAAAATTGGGTGGAGAAAACCCTAGGTCAAGTGAGACAACATTGTTACAACAAGTTGTTGTTCCTTCTAATTCTTCCAATTCAATTAGCACAATGCAAAAAAATAGTTATGAGAAAGAGGATGTTGGGAGAAGGTGGCCAAGAGATGAGGTGTTAGCATTGATAAAGCTGAGGTGTAGTGTGATGAATAGTACTACTCATGAAGATCAAGAGAAGGAAGAAGGAAACAATAATAAGGGACCTCTTTGGGAGAGAATCTCGCAAGGGATGTCAGAGTTGGGATATAAGAGAAGTGCAAAGAGGTGCAAAGAGAAATGGGAGAACATAAACAAGTACTTTAGAAAAACCAAAGATATTAATAAGAAAAGGTCCCTAGACTCTAGGACATGTCCCTACTTCCATCAATTGACCTCTTTGTATAGTCACGGAAAACTATCTCATTCTGATCACTTAAATCCAACCGTCAATTCTGGGGAAGTGCCACCAGATTCAGATCATCAAGCCCAATTACCTGCTGAGTCCTAG 3243 0.4002 MMAMKTLGESDVGILSYISNLPGFSGILKQRYSDFIVHEVDIDGNTVQLSSLDAPAPAEELPKCSFQSVQENETNASDTTTTIISYASQIESLKSLVGDSDAARLEEFINQISAGEDSVSPIVLSPDSDKSHRTAVHNFFKENFKFLVTDTIDGPDALSKSIRVRLNSRGKNSKKRKERDDKPFDSRGSENWPENVGKFLRFHLYKENKDTQEALGVIGNMLGIQSRSFGFAGTKDKRAVSTQRVTVYKQQASRLASLNERLFGIKVGDFCYVKEGLCLGQLSGNQFTITLRGIVADSEDILKAAADALGRHGFINYFGLQRFGSGSVPTHLIGAALLQGKWKLAARKYYKDSNDVAGTLKQLPRYLVAERAVLQSLKKSPQNYLQALKTIPRTLRMMYVHSYQSYLWNHAASTRVQKYGTKLVLGDLVYCKENPSGKNTGLVGSKCDDNCGDRYDSNNEDEVSGDTDEERYGDVKVVNAEDLNSGYYTIDDIILPMPGSRVIYPTNDIAEVYHHLANKDGINLTKSVHNMKEFSITSMTGSYRRVFQKPINFEWELLTYTDSNKPLVETDLDKIGKSKPRNNVKPVGAPNGKKEEAIDCTRQLECSDDGAKEVKLPPDESVSDPSSQDSHIALKLSFILPASCYATMAIRELLKTSTSRQLPPELLDSWTNDEVLALLRIRSTMENWFPQLTWEHVSRKLAELGFKKSAEKCKEKFEEETRYFNNLGKTSYRFVSELEELYHHQNPHDQVVTEKTMEGDSMGHTLEENSTDINKMMVVEKSKKRKRRDKFEMLKGFCESIVNKMMAQQEEIHNKLLHEMVKRDEEKLAREEAWKKQEIDRFNKELEIMAQEQAIASDRHATIIQFLNKYLSSSTSTTTSSPPKCKTKGNSSPILTHLQNPNPSNLVKLGGENPRSSETTLLQQVVVPSNSSNSISTMQKNSYEKEDVGRRWPRDEVLALIKLRCSVMNSTTHEDQEKEEGNNNKGPLWERISQGMSELGYKRSAKRCKEKWENINKYFRKTKDINKKRSLDSRTCPYFHQLTSLYSHGKLSHSDHLNPTVNSGEVPPDSDHQAQLPAES. 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05874 1080 CDD PseudoU_synth_ScPUS7 199 654 - -
Seca1g05874 1080 MobiDBLite consensus disorder prediction 970 989 - -
Seca1g05874 1080 Pfam Myb/SANT-like DNA-binding domain 668 730 IPR044822 -
Seca1g05874 1080 Pfam Myb/SANT-like DNA-binding domain 950 1044 IPR044822 -
Seca1g05874 1080 Gene3D - 670 726 - -
Seca1g05874 1080 Gene3D - 952 1021 - -
Seca1g05874 1080 MobiDBLite consensus disorder prediction 873 902 - -
Seca1g05874 1080 Gene3D TruD, catalytic domain 351 658 IPR042214 -
Seca1g05874 1080 MobiDBLite consensus disorder prediction 1050 1069 - -
Seca1g05874 1080 Pfam tRNA pseudouridine synthase D (TruD) 194 554 IPR001656 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Seca1g05874 1080 SMART sant 666 723 IPR001005 -
Seca1g05874 1080 SMART sant 948 1018 IPR001005 -
Seca1g05874 1080 MobiDBLite consensus disorder prediction 173 188 - -
Seca1g05874 1080 FunFam Trihelix transcription factor GT-2 952 1021 - -
Seca1g05874 1080 FunFam Trihelix transcription factor GT-2 670 726 - -
Seca1g05874 1080 CDD GT1 950 1023 - -
Seca1g05874 1080 ProSiteProfiles Myb-like domain profile. 951 1016 IPR001005 -
Seca1g05874 1080 SUPERFAMILY Pseudouridine synthase 11 656 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Seca1g05874 1080 MobiDBLite consensus disorder prediction 1050 1080 - -
Seca1g05874 1080 ProSitePatterns Uncharacterized protein family UPF0024 signature. 233 246 IPR020119 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Seca1g05874 1080 Gene3D - 193 281 - -
Seca1g05874 1080 ProSiteProfiles TRUD domain profile. 313 549 IPR011760 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Seca1g05874 1080 FunFam Multisubstrate pseudouridine synthase 7 146 350 - -
Seca1g05874 1080 MobiDBLite consensus disorder prediction 168 189 - -
Seca1g05874 1080 NCBIfam tRNA pseudouridine(13) synthase TruD 185 658 IPR001656 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Seca1g05874 1080 PANTHER TRNA PSEUDOURIDINE SYNTHASE D 3 660 IPR001656 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Seca1g05874 1080 ProSiteProfiles Myb-like domain profile. 669 721 IPR001005 -
Seca1g05874 1080 MobiDBLite consensus disorder prediction 971 985 - -
Seca1g05874 1080 MobiDBLite consensus disorder prediction 574 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05874 Seca-Chr1 162152175 162167588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05874 670 1048 Trihelix Transcription Factor Family AT5G28300 43.923 1.32e-98 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca1g05874 TruD 2.5e-59 CL0649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05874 K06176 - gmx:100795469 994.186