Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05868 ATGGCACCAGAAGTATATGAAGAGGCATATAATGAATTAGTCGACATATATTCCTTTGGTATGTGTGTATTAGAAATGGTCACATTTGAGTATCCTTATAGTGAGTGCAACCATCCAGCACAAATCTACAAGAAAGTTATTTCTGGGAAAAAACCAGATGCTTTGTATAAAGTGAAGGATCCTGAAGTGCGAGAATTTGTTGAAAAATGCCTGGCAACAGTGTCTCTAAGGCTCTCTGCAAGGGAGCTTCTAGATGATCCTTTTCTTAGAATTGATGATTATGAATATGATTTAGGACCAGTAGATGATGGAGCATTTGATGACTTGGGTCCTCTGTTTGGTCAGCCATTCTTTGATCTCCATCGGAGCTATAGTAACTTAAGCACTGAATACTCAAATGGCTTTGGATATGAAGGAGACTGGTATTGTCATCCAGCTGAGATCGAACCTAATGGAATTGAACTTTTCGAGTGCCATGATGATGAACCCTCCAAAGATGTTGACATAAGCATCAAAGGCAAAAGAAAAGATGATGGCAGCATCTTTTTGAGACTAAGAATTGCAGACAAAGAAGGTCATATTCGAAACATTTATTTCCCATTTGACATAGAGATGGATACAGCATTAAGTGTGGCAACTGAAATGGTTGCAGAACTTGACATTACTGATCAAGATGTTACCAGAATAGCAGATATGATAGATGGGGAAATTGCTTCATTGGTACCTGAATGGAAGCCAGGGCCAGGATTTGAGGAAACTACCCATTTTGCAAATCAAAGTATCTGTCACAACTGTGTGTCTAATCATACATCTGGTGGCACTGTTTTGGACTTTCTTTCACATAATCAAGATGGAAATAACTTGCAGCTTCTTCAATGCTGTAGGCATGGATGTGCTTCAATGCATGGGCGGTTTGAGGAGATTACCTTCCAATCTGAGGAGTATGACAACCATGTTAGAGAGGATGCACAACCTAAAGTATCAAGCCAACCAGACTTCTTGCATTACCAGGAGTCATGGAATCATCATGAAAGTCGCGAACTGAGTCCAGTAGAGTCTGCTCAAAGCCATTCTGATGAACAATATGAACATTTAGATAAATCAGTATCAGCAGAAGATAAAGTACAGGATGCTTGGCAGAACAAGTTTACACCCAATTCAGGAAACTCTTTTAGAAATTTATCAAGATCTCATTCTTTCTCTACTATCCATATGTTATATTGTGGCCATGAGAATGAATGTGAGAAAGAGATCCAACAAGAGGTGAGATGGCTCAGAGCAAAATACCAAATGGAGTTAAGGGAACTTAGGGATGAACAATTTGGCCTAGCAGATTCATCTTCAAATACTAGTGAGTGTAACAGAAGGCACAAAACAGAACATGGCATTAAGCCACCTCCTCTGATAGAAACAATAAATGGGGTAGACCATGGGATTCATTTGAAACCCTTTGGTAATTACTTGAATTATGATTCCAGTTGTCATTCTCAAGTCCAAAAGAGCCACCCCAATTTGGACACCCAAAGGGCCCAAAATTGTGAGGTGATGTGTTCTCATGAAGAAGGTATGGGTAGTGCAAAGAGATTTTACACACGGTCATTGCTTCCAGATACTCTACACAGGACAATTTCACTCCCTATTGATGCTGTGGATGTATAA 1659 0.396 MAPEVYEEAYNELVDIYSFGMCVLEMVTFEYPYSECNHPAQIYKKVISGKKPDALYKVKDPEVREFVEKCLATVSLRLSARELLDDPFLRIDDYEYDLGPVDDGAFDDLGPLFGQPFFDLHRSYSNLSTEYSNGFGYEGDWYCHPAEIEPNGIELFECHDDEPSKDVDISIKGKRKDDGSIFLRLRIADKEGHIRNIYFPFDIEMDTALSVATEMVAELDITDQDVTRIADMIDGEIASLVPEWKPGPGFEETTHFANQSICHNCVSNHTSGGTVLDFLSHNQDGNNLQLLQCCRHGCASMHGRFEEITFQSEEYDNHVREDAQPKVSSQPDFLHYQESWNHHESRELSPVESAQSHSDEQYEHLDKSVSAEDKVQDAWQNKFTPNSGNSFRNLSRSHSFSTIHMLYCGHENECEKEIQQEVRWLRAKYQMELRELRDEQFGLADSSSNTSECNRRHKTEHGIKPPPLIETINGVDHGIHLKPFGNYLNYDSSCHSQVQKSHPNLDTQRAQNCEVMCSHEEGMGSAKRFYTRSLLPDTLHRTISLPIDAVDV. 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05868 552 Pfam Protein tyrosine and serine/threonine kinase 1 73 IPR001245 GO:0004672|GO:0006468
Seca1g05868 552 MobiDBLite consensus disorder prediction 344 371 - -
Seca1g05868 552 MobiDBLite consensus disorder prediction 357 371 - -
Seca1g05868 552 FunFam probable serine/threonine-protein kinase WNK9 179 263 - -
Seca1g05868 552 SUPERFAMILY Protein kinase-like (PK-like) 1 372 IPR011009 -
Seca1g05868 552 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 456 - -
Seca1g05868 552 MobiDBLite consensus disorder prediction 444 466 - -
Seca1g05868 552 Gene3D - 179 262 - -
Seca1g05868 552 ProSiteProfiles Protein kinase domain profile. 1 89 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05868 552 Gene3D Transferase(Phosphotransferase) domain 1 1 94 - -
Seca1g05868 552 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 182 236 IPR024678 GO:0004674|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05868 Seca-Chr1 162099694 162103597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05868 1 441 MAP Kinase Kinase Kinase AT3G04910 55.649 1.15e-159 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Seca1g05868 PK_Tyr_Ser-Thr 8.9e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05868 K08867 - gmx:100775959 843.188