Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05866 ATGGCGGACAAAGCTGTGACCATCCGAACCCGAAAGTTCATGACAAACCGGCTTCTCTCTAGAAAGCAATTCATCATTGATGTGCTTCATCCAGGGAGGGCAAATGTTTCCAAGGCTGAGCTTAAGGAAAAGTTGGCTAGAATGTATGAAGTGAAGGACCCTAATACCGTATTTGTCTTCAAATTCCGAACACATTTTGGTGGTGGCAAATCCACTGGTTTTGGTTTGATTTATGATTCAGTTGAGAATGCGAAGAAGTATGAGCCTAAGTACAGGCTTATCAGGGTGAGTCACCAATCAACATAA 306 0.4281 MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRANVSKAELKEKLARMYEVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRVSHQST. 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05866 101 ProSitePatterns Ribosomal protein S24e signature. 66 88 IPR018098 -
Seca1g05866 101 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 6 98 IPR012678 GO:0003735|GO:0005840|GO:0006412
Seca1g05866 101 Gene3D - 1 100 - -
Seca1g05866 101 Pfam Ribosomal protein S24e 26 96 IPR001976 GO:0003735|GO:0005840|GO:0006412
Seca1g05866 101 Hamap 30S ribosomal protein S24e [rps24e]. 4 100 IPR001976 GO:0003735|GO:0005840|GO:0006412
Seca1g05866 101 PANTHER 40S RIBOSOMAL PROTEIN S24 1 96 IPR001976 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05866 Seca-Chr1 162081070 162081941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05866 1 95 Cytoplasmic Ribosomal Protein Gene Family AT5G28060 88.421 2.07e-62 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05866 K02974 - gmx:100802918 190.274