Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05864 ATGGACGACGATTACGAATCTCAAGAGGACGAAGAAGACGACGATGACGACGACGTTTTGCCTGACGACGAAGAAAACGAACCCTCTCCTTCCGCCTCCTCCGCTCTCGCCGTCACCGTCGCTGTTCCCGGTTCCGCCGTCTACAACGGAGGCCACGCTCCAATTTCGACGGCCGCCTCCACCACAATCGTCGTCGCCGACTCCCCCGATCCGAAACGGCAGCGCGTTGAGCCAATTGAAGAGAAAAAGCCTTTGGTCGACGATTCACGGAGGCTATTTCAACGATTGTGGACCGACGAAGACGAGATCGAGCTCTTACAAGGTTTCCTTGACTACACCTCACAAAGAGGATCCTCTCACCACAACGACACCGCTTTGTTTTACGACCAAATCAAGTCCAAGCTCCAACTCGATTTCAACAAAAACCAGCTCGTCGAGAAGATCCGAAGGTTGAAGAAGAAATACCGAAACGTTCTCAACAAAATTGGCTCCGGTAAAGAATTCTCCTTCAAAACCGCTCACGATCAAGCCACCTTCGAAATCTCACGCAAGATCTGGAGCAACGTGGCACCAATCGGCGGCGACAATAATGCCTTGGACGACGACGAAATCAACCTCAACCCTACACCTAACCCTAACCCTAATTTTAGTCCCTCAGTGAACAAGATCGAGGTCCTGTTCGGGAATTCAACGGAGAAGAAATCACGGAAGCGGTCACGGCCTCAATCAGGGATCAGAAGCAATGAGAAGCGCGAGTCAAACGATGGATCCGCGTCTCGTAATTGTATCACCAATGCTGCTACTGTTTCTGCAACTGCAACTGCAACCCCTACCACCACCCCTATTACTGCTGCTACCACGACGATTAACGCTAATAATAATGGTTGTAACAGTGGGAATAGCATAGGGGGTTTGATTGAAGAAACGGTGAGGAGTTGTTTGTCGCCGTTTTTGAAGGAATTGGTGGGTGGTGCCATGGGAGGACCATTTGGGGGAAGAGGGTTTTCGTTGAATCCGGTGATGCCGTTGATGAATTTAGGTTTTGGGGGTAAGGATTTGGTGGATGAGAAATGGAGGAAGCAACAGATTTTGGAGTTGGAAGTGTATTCGAAGCGGTTGGAGCTTGTGCAGGATCAGATCAAGGCTGCTATAGAGGAATTGCGGTCAACTGGTGGAGGATGA 1182 0.5025 MDDDYESQEDEEDDDDDDVLPDDEENEPSPSASSALAVTVAVPGSAVYNGGHAPISTAASTTIVVADSPDPKRQRVEPIEEKKPLVDDSRRLFQRLWTDEDEIELLQGFLDYTSQRGSSHHNDTALFYDQIKSKLQLDFNKNQLVEKIRRLKKKYRNVLNKIGSGKEFSFKTAHDQATFEISRKIWSNVAPIGGDNNALDDDEINLNPTPNPNPNFSPSVNKIEVLFGNSTEKKSRKRSRPQSGIRSNEKRESNDGSASRNCITNAATVSATATATPTTTPITAATTTINANNNGCNSGNSIGGLIEETVRSCLSPFLKELVGGAMGGPFGGRGFSLNPVMPLMNLGFGGKDLVDEKWRKQQILELEVYSKRLELVQDQIKAAIEELRSTGGG. 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05864 393 Coils Coil 141 161 - -
Seca1g05864 393 MobiDBLite consensus disorder prediction 229 256 - -
Seca1g05864 393 MobiDBLite consensus disorder prediction 202 228 - -
Seca1g05864 393 MobiDBLite consensus disorder prediction 199 261 - -
Seca1g05864 393 PANTHER BNAANNG10740D PROTEIN-RELATED 7 386 IPR007592 GO:0006355
Seca1g05864 393 MobiDBLite consensus disorder prediction 1 25 - -
Seca1g05864 393 Coils Coil 366 386 - -
Seca1g05864 393 MobiDBLite consensus disorder prediction 1 35 - -
Seca1g05864 393 Pfam Protein of unknown function, DUF573 93 187 IPR007592 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05864 Seca-Chr1 162072322 162073503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05864 31 393 GeBP Transcription Factor Family AT5G28040 48.082 7.35e-97 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Seca1g05864 DUF573 1.7e-34 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05864 - - gmx:100779712 465.692