Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05858 ATGGCTCTATCACCTCCCTCTCTAATTACATTTAAAGTGTGGAGGAACCAGCCGGAGCTAGTGGCTCCTGCTACACCCACCCCTCGCGAAGTTAAACTATTATCTGACATTGATGATCAAGAAGGCCTGCGTTACCCAATCCCATTCATACAAGTGTATCGTAGACTCAGGGAGGGACCTAACCGCAAATTGATGGTGGATTGTACTGGGGAGGGCGCCATGTTCATTGAAGCTGATGCAGATGTAACACTCCATCAATTCGGTGGTGATGCTCTTCAACCTCCATTCCCATGCTTCCAAGAACTCTTATATGACGTTCCAGGCTCAGAACACTTTATCAATTGTCCCCTACTCATACAGGTCACACGTCTTAAGTGTGGTGGTTTTATCGTGGCCACCCGCATAAACCACACCATGAGCGACGGAATTGGTATTAAACAGTTCATGAATGCATGGGCCGGAATGGCTCGAGGCGCACACCAACCTTCCATTTTACCTGTGTGGCATAGGGAGATTTTGATGGCAAGAGATCAACCACACATTACATGCAACCATCGCGAATACGAGCAAGTGACCGATAACACCCTCAAGGAAGGGACCATCATGGTTGATCGATCTTTCTTTTTTGGACCCTCTGAGATAGCTGCACTTCGTCGCTTAGTTCCTTTTCATCTTCGCGAACGGAGTACCACATTTGATATTATCACTGCATGCTTGTGGTGTTGTTGCACAAAAGCATTGCAACTAAAGCAAGAGGAAGAGGTTCGCATGATGTGCATCGTCAATTCACGTGCCAGGTTTAACCCTCCATTACCCGTTGGTTATTATGGTAACAGTTGTGTGTTCCCCGCAGCGGTTACGACTGTTGGAAAACTTCGTGGCAACCCATTTGGCTATGCCGTGGAGTTAATAAGGAAAGTAAAAGATGAGGTCACTGAGGAGTATGTGCATTCTGTGGCGGATTTTATGGTGTTGAAAGGACGATGTTTATTTACAACGGTGAGGTCTTGCATTATGTCTGATTTGACACGTGCTAGATTCAGAGAAATAGACTTTGGGTGGGGCAAGGCAATATATGGTGGTCTGGCTAAAGGTGGGGCCGGACCCTTCCCTGGAGCAACCTTTCTCATACCGTCTAAGAATGCAAAAGGAGAAGAAGGTATTTTATTGTCAATTTGCTTGCCTGCTGAAACTATGGAGAGATTTGCTAAAGAGTTGAATGACATGATAAGGAACTATGACCAACCTACATTCCTAATCATGGCTCTATTACCTCCCTCTCTAATTACATTTAAAGTGTGGAGGAGCCAACCCGAGCTAGTGGCTCCTGCTACACCCACCCCACGCGAAGTTAAACTATTATCTGATATTGATGATCAAGAAGGCCTGCGTTTCCAAATCTCATTCCTACAAGTGTATCGTCATGAACCATCCATGGCAGGGAAAGACCCTGTTCAAGTCCTTAAAAAGGCACTCGCACAAACACTTGTATTCTATTACCCTTTTGCGGGTAGACTTAGGGAGGGACCAAACCGCAAATTGATGGTGGATTGTACTGGGGAGGGCGTCATGTTCATTGAAGCTGATGCAGATGTAACACTCCATCAATTCGGTGATGCTCTTCAACCTCCATTCCCATGCTTCCAAGAGCTCTTATATGACGTTCCAGGCTCAGAACACGTTATCAATTGTCCCCTGCTACTCATACAGGTCACACGTCTTAAGTGTGGTGGTTTTTTCGTGGCCACTCGCTTAAACCACACCATGAGCGACGGAACGGGTATAAAACAATTCATGAACGCCTGGGCCGAAATGGCTCGAGGTGCAGGCCAACCTTCCATTTTACCTGTGTGGCATAGGGAGCTTCTGATGGCAAGAGATCCATCGCGCATTACATGCAACCATCGTGAATACGAGCAAGTGATCGATAACACCCTCGAGGAAGGGACCATCATGGTTGATCGATCTTTCTTCTTTGGACCCTCTGAGATAGCTGCACTTCGTCGCTTGCTTCCCTTTCACCTTCGCGAACGCAGTACCACATTTGATATTATCACCGCATGCTTGTGGTGCTATCGCACAAAAGCATTGCGGTTAAGGCCAGAAGAAGAAGTTCGAATGATGTGCATCATCAATTCACGTGCCAGGTTTAACCCTCCATTACCCGTTGCTTATTATGGCAACGGTTTTGTGTTCCCTGCGGCGGTCACAACTGCTGGAAAACTATGTGGAAACTCATTTGGCTATGCTGTGGAGTTAATAAGGAAAGTAAAAGTCGAGGTCACCGAGGAGTATGTGCATTCTGTGGCAGATTTTATGGTATTGAGGGGACGATGTTTATTTACAACAGTGAGATCTTGCATTGTGTCTGATTTGACACGTGCTAGATTCAGAGAAGTGGACTTTGGGTGGGGCAATGCAATATATGGTGGCGTGGCCAAAGGTGGGGCCGGACCTTTCCCTGGAGCAACCTATCTCATACCGTCTAGCAATGCGAAGGGAGAGGAAGGTATTGTAGTGTCAATTTGCTTGCCAATCGAGGTTATGGAGAGGTTTGCTAAAGAGTTGGATGACATGATAGGGAACCAAGACTAG 2595 0.4655 MALSPPSLITFKVWRNQPELVAPATPTPREVKLLSDIDDQEGLRYPIPFIQVYRRLREGPNRKLMVDCTGEGAMFIEADADVTLHQFGGDALQPPFPCFQELLYDVPGSEHFINCPLLIQVTRLKCGGFIVATRINHTMSDGIGIKQFMNAWAGMARGAHQPSILPVWHREILMARDQPHITCNHREYEQVTDNTLKEGTIMVDRSFFFGPSEIAALRRLVPFHLRERSTTFDIITACLWCCCTKALQLKQEEEVRMMCIVNSRARFNPPLPVGYYGNSCVFPAAVTTVGKLRGNPFGYAVELIRKVKDEVTEEYVHSVADFMVLKGRCLFTTVRSCIMSDLTRARFREIDFGWGKAIYGGLAKGGAGPFPGATFLIPSKNAKGEEGILLSICLPAETMERFAKELNDMIRNYDQPTFLIMALLPPSLITFKVWRSQPELVAPATPTPREVKLLSDIDDQEGLRFQISFLQVYRHEPSMAGKDPVQVLKKALAQTLVFYYPFAGRLREGPNRKLMVDCTGEGVMFIEADADVTLHQFGDALQPPFPCFQELLYDVPGSEHVINCPLLLIQVTRLKCGGFFVATRLNHTMSDGTGIKQFMNAWAEMARGAGQPSILPVWHRELLMARDPSRITCNHREYEQVIDNTLEEGTIMVDRSFFFGPSEIAALRRLLPFHLRERSTTFDIITACLWCYRTKALRLRPEEEVRMMCIINSRARFNPPLPVAYYGNGFVFPAAVTTAGKLCGNSFGYAVELIRKVKVEVTEEYVHSVADFMVLRGRCLFTTVRSCIVSDLTRARFREVDFGWGNAIYGGVAKGGAGPFPGATYLIPSSNAKGEEGIVVSICLPIEVMERFAKELDDMIGNQD. 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05858 864 Gene3D - 8 185 IPR023213 -
Seca1g05858 864 Gene3D - 637 856 IPR023213 -
Seca1g05858 864 Gene3D - 186 406 IPR023213 -
Seca1g05858 864 Gene3D - 431 636 IPR023213 -
Seca1g05858 864 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 439 857 - -
Seca1g05858 864 Pfam Transferase family 436 858 - -
Seca1g05858 864 Pfam Transferase family 55 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05858 Seca-Chr1 162013398 162020819 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05858 440 856 Monolignol Biosynthesis Gene Families AT5G48930 30.365 4.17e-46 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05858 K19861 - ini:109152737 688.723