Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05857 ATGGCTCTATCACCTCCCTCTCTAATTACATTTAAAGTGCGAAGGTGCCGACCGGAGCTAGTGGCTCCTGCTACACCCACCCCTCGCGAAGTTAAACTATTATCTGACATTGATGATCAAGAAGGCCTGCGTTTCCAAATCCCAATCGTACAAGTGTATCGTCATGAACCATCCATGGCAGGGAAAGACCCTGTTCAAGTCCTTAAAAAGGCACTCGCACAAACACTTGCATTCTATTACCACTTTGCGGGTAGACTTAGGGAGGGACCTAACCGCAAATTGATGGTGGATTGTACTGGGGAGGGCGTCATGTTCATTGAAGCTGATGCAGATGTAACACTCCATCAATTCGGTGATGCTCTTCAACCTCCATTCCCATGCTTCCAAGAGCTCTTATATGACGTTCCAGGCTCAGAACATGTTATCAATTGTCCCCTTCTACTCATACAGGTCACACGTCTTAAGTGTGGTGGTTTTATGGTGGCCACCCGCTTAAACCACACCATGAGCGACGGAGCTGGTATGAAACAGTTCATGAACACCTGGGCCGAAATGGCTCGAGGTGCAGGCCAACCTTCCATTTTACCTGTGTGGAATAGGGAGCTTCTAATGGCAAGAGATCCACCGCACATTACATGCAACCATCGCGAATACGAGCAAGTGACCGATAACACCCTCGAGGAAGATAACACCCTCAAGGAAGGGACCATCATGGTTGATCGATCTTTCTTTTTTGGACCCTCTGAGATAGCTGCACTTCGTCGCTTAGTTCCTTTTCATCTTCGCGAACGGAGTACCACATTTGATATTATCACTGCATGCTTGTGGTGTTGTCGCACAAAAGCATTGCAACTAAAGCAAGAGGAAGAGGTTCGCATGATGTGCGTCGTCAATTCACGTGCCAGGTTTAACCCTCCATTACCCGTTGGTTATTATGGTAACAATTGTGTGTTCCCCGCAGCGGTTACGACTGTTGGAAAACTTTGTGGCAACTCATTTGGTTATGCCGTGGAGTTAATAAGGAAAGTAAAAGATGAGGTTACTGAGGAGTATGTGCATTCTGTGGCGGATTTTATGGTGTTGAAAGGACGGTGTTTATTTACAACAGTGAGGTCTTGCATTGTGTCTGATTTGACACGTGCTAGATTCAGAGAAATAGACTTTGGGTGGGGCAAGGCAATATATGGTGGTGTGGCTAAAGGTGGGGCCGGACTCTTCCCTGGAGCAACCGTTCTCACACCGTCTAAGAATGCAAAAGGAGAAGAAGGTATTTTATTGCCAATTTGCTTGCCTGCTGAAACTATGGAGAGATTTGCTAAAGAGTTGAATGACATATTTAAAGTGTGGAGGAACCAACCCGAGCTAGTGGCTCCTGCTACACCCACCCCACGCGAAGTTAAACTATTGTCTGATATTGATGATCAAGAAGGCCTGCGTTTCCAAATCCCAATCATACAAGTGTGTCGTCATGAACCATCCACGGCAGGGAAAGACCCTGTTCAAGTCCTTAAAAAGGCACTCGCACAAACACTTGTATTCTATTACCCCTTTGCGGGTAGACTTAGGGAGGGACCTAACCGCAAATTGATGGTGGATTGTACTGATGCATATGTAACACTCCATCAATTCGGTGATGCTCTTCAACCTCCATTCCCATGCTTCCAAGAGCTCTTATATGACGTTCCAGGCTCAGAACACGTTATCAATTGTCCCCTGCTACTCATACAGGTCACACGTCTTAAGTGTGGTGGTTTTTTCGTGGCCACTCGCTTAAACCACACCATGAGCGACGGAACGGGTATAAAGCAATTCATGAACGCCTGGGCCGAAATGGCTCGAGGTGCAGGCCAACCTTCCATTTTACCTGTGTGGCATAGGGAGCTTCTGATGGCAAGAGATCCATCGCGCATTACATGCAACCATCGTGAATACGAGCAAGTGATCGATAACACCCTCGAGGAAGGGACCATCATGGTTGATCGATCTTTCTTCTTTGGACCCTCTGAGATAGCTGCACTTCGTCGCTTGCTTCCCTTTCACCTTCGCGAACGCAATACCACATTTGATATTATCACCGCATGCTTGTGGTGCTATCGCACAAAAGCATTGCGGTTAAGGCCAGAAGAAGAAGTTCGCATGATGTGCATCATCAATTCACGTGCCAGGTTTAACCCTCCATTACCCGTTGCTTATTATGGCAACGGTTTTGTGTTCCCTGCGGCGGTCACAACTGCTGGAAAACTATGTGGAAACTCATTTGGCTATGCTGTGGAGTTAATAAGGAAAGTAAAAGTCGAGGTCACCGAGGAGTATGTGCATTCTGTGGCAGATTTTATGGTATTGAGGGGACAATGTTTATTTACAACGGTGAGATCTTGCATTGTGTCTGATTTGACACGTGCTAGATTCAGAGAAGTGGACTTTGGGTGGGGCAATGCAATATATGGTGGCGTGGCCAAAGGTGGGGCCGGACCTTTCCCTGGAGCAACCTATCTCATACCGTCTAGCAATGCGAAGGGAGAGGAAGGTATTGTAGTGCCAATTTGCTTGCCAATCGAGGTTATGGAGAGGTTTGCTAAAGAGTTGGATGACATGATAGGGAACCAAGACTAG 2613 0.4696 MALSPPSLITFKVRRCRPELVAPATPTPREVKLLSDIDDQEGLRFQIPIVQVYRHEPSMAGKDPVQVLKKALAQTLAFYYHFAGRLREGPNRKLMVDCTGEGVMFIEADADVTLHQFGDALQPPFPCFQELLYDVPGSEHVINCPLLLIQVTRLKCGGFMVATRLNHTMSDGAGMKQFMNTWAEMARGAGQPSILPVWNRELLMARDPPHITCNHREYEQVTDNTLEEDNTLKEGTIMVDRSFFFGPSEIAALRRLVPFHLRERSTTFDIITACLWCCRTKALQLKQEEEVRMMCVVNSRARFNPPLPVGYYGNNCVFPAAVTTVGKLCGNSFGYAVELIRKVKDEVTEEYVHSVADFMVLKGRCLFTTVRSCIVSDLTRARFREIDFGWGKAIYGGVAKGGAGLFPGATVLTPSKNAKGEEGILLPICLPAETMERFAKELNDIFKVWRNQPELVAPATPTPREVKLLSDIDDQEGLRFQIPIIQVCRHEPSTAGKDPVQVLKKALAQTLVFYYPFAGRLREGPNRKLMVDCTDAYVTLHQFGDALQPPFPCFQELLYDVPGSEHVINCPLLLIQVTRLKCGGFFVATRLNHTMSDGTGIKQFMNAWAEMARGAGQPSILPVWHRELLMARDPSRITCNHREYEQVIDNTLEEGTIMVDRSFFFGPSEIAALRRLLPFHLRERNTTFDIITACLWCYRTKALRLRPEEEVRMMCIINSRARFNPPLPVAYYGNGFVFPAAVTTAGKLCGNSFGYAVELIRKVKVEVTEEYVHSVADFMVLRGQCLFTTVRSCIVSDLTRARFREVDFGWGNAIYGGVAKGGAGPFPGATYLIPSSNAKGEEGIVVPICLPIEVMERFAKELDDMIGNQD. 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05857 870 Gene3D - 11 219 IPR023213 -
Seca1g05857 870 Gene3D - 446 642 IPR023213 -
Seca1g05857 870 Pfam Transferase family 12 442 - -
Seca1g05857 870 Pfam Transferase family 451 864 - -
Seca1g05857 870 Gene3D - 220 442 IPR023213 -
Seca1g05857 870 Gene3D - 643 862 IPR023213 -
Seca1g05857 870 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 20 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05857 Seca-Chr1 161972414 161993773 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05857 455 862 Monolignol Biosynthesis Gene Families AT5G48930 28.767 3.10e-40 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05857 K19861 - ini:109152737 728.783