Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05856 ATGATGTGCATCATCAATTCACGTGCCAGGTTTAACCGTCCATTACCCGTTGCTTATTATGGCAACGGTTTTGTGTTCCCTGCGGCGGTCACAACTGCTGGAAAACTATGTGGAAACTCATTTGGCTATGCTGTGGAGTTAATAAGGAAAGTACAAGTCGAGGTCACCGAGGAGTATGTGCATTCTGTGGCAGATTTTATGGTATTGAGGGGACGATGTTTATTTACAACGGTGAGATCTTGCATTGTGTCTGATTTGACACGTGCTAGATTCAGAGAAGTGGACTTTGGGTGGGGCAATGCAATATATGGTGGCGTGGCCAAAGGTGGGGCCGGACCTTTCCCTGGAGCAACCTATCTCATACCGTCTAGAAATGCGAAGGGAGAGGAAGGTATTGCAGTGCCAATTTGCTTGCCAATCGAGGTTATGGAGAGGTTTGCTAAAGAGTTGGATGACATGATAGGGAACCAAGACTAG 477 0.4675 MMCIINSRARFNRPLPVAYYGNGFVFPAAVTTAGKLCGNSFGYAVELIRKVQVEVTEEYVHSVADFMVLRGRCLFTTVRSCIVSDLTRARFREVDFGWGNAIYGGVAKGGAGPFPGATYLIPSRNAKGEEGIAVPICLPIEVMERFAKELDDMIGNQD. 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05856 158 Gene3D - 1 150 IPR023213 -
Seca1g05856 158 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 1 151 - -
Seca1g05856 158 Pfam Transferase family 2 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05856 Seca-Chr1 161945872 161946348 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05856 6 150 Monolignol Biosynthesis Gene Families AT5G48930 28.105 9.08e-11 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05856 K19861 - aprc:113862049 246.514