Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05855 ATGGCTCTATCACCTCCCTCTCTAATTACATTTAAAGTGCGAAGGTGCCGACCGGAGCTAGTGGCTCCTGCTACACCCACCCCTCGCGAAGTTAAACTATTATCTGGCATTGATGATCAAGAAGGCCTGCGTTTCCAAATCTCAATCGTACAAGTGTATCGTCATGAACCATCCATGGCAGGGAAAGACCCTGTTCAAGTCCTTAAAAAGGCACTCGCACAAACACCTGTATTCTATTACCCCTTTGCGGGTAGACTTAGGGAGGGACCTAACCGCAAATTGATGGTGGATTGTACTGGGGAGGGCGTCATGTTCATTGAAGCTGATGCAGATGTAACACTCCATCAATTCGGTGATGCTCTTCAACCTCCATTCCCATGCTTCCAAGAGCTCTTATATGACGTTCCAGGCTCAGAACATGTTATCAATTGTCCCCTTCTACTCATACAGGTCACACGTCTTAAGTGTGGTGGTTTTATGGTGGCCACCCGCTTAAACCACACCATGAGCGACGAAGCTGGTATGAAACAGTTCATGAACACCTGGGCCGAAATGGCTCGAGGTGCAGGCCAACCTTCCATTTTACCTGTGTGGAATAGGGAGCTTCTAATGGCAAGAGATCCACCGCGCATTACATGCAACCATCGCGAATACGAGCAAGTGACCGATAACACCCTCGAGGAAGGGACCATCATGGTTGATCGATCTTTCTTCTTTGGACCCACTGAGATAGCCGCCCTTCGTCGCTTGCTTCCCTTTCACCTTCGCAAACGCAGTACCACATTTGATATTATCACTGCATGTTGGTGGTGTTGTCGCACCAAAGCATTGCAGCTAAAGCCAGAAGAAGAGGTTCGTATGATGTGCATCATCAATTCACGTTCCAGGTTTAACCCTCCTTTACCTGTTGGTTATTATGGCAACGGTTTTGTGTTCCCTGCGACAGTTACAACTGTTGGAAAACTTTGTGGAAACCCATTTGCCTATGTCGTGGATTTAATAAGGAAAGTAAAAGATGAGGTCACCGAGGAGTATGTGCATTCTGTGGCAGATTTTATGGTGTTGAAAGGACAATGTTTGTTTACATCAGTGAGGTCTTGCATTGTGTCTGATCTGACATGTGCTAGATTCAGAGAAGTGGACTTTGGGTGGGGCAAGGCAGTATATGGTGGTGTGGCCAAAGGCGGGGCCGGACCCTTTCCTGGAGCAACCTTTCTCACACCATCTAAGAATGCAATAGGAGAAGAAGGTATTTTATTGCCAATTTGCTTGCCTGTCGAAACTATGGAGAGGTTTGCTAAAGAGTTGAATGACATGATAGGGAACCATGACCAGCCTACAGTGAGTGGTACTAGGTTTATCATGTCTACCTTATAA 1377 0.467 MALSPPSLITFKVRRCRPELVAPATPTPREVKLLSGIDDQEGLRFQISIVQVYRHEPSMAGKDPVQVLKKALAQTPVFYYPFAGRLREGPNRKLMVDCTGEGVMFIEADADVTLHQFGDALQPPFPCFQELLYDVPGSEHVINCPLLLIQVTRLKCGGFMVATRLNHTMSDEAGMKQFMNTWAEMARGAGQPSILPVWNRELLMARDPPRITCNHREYEQVTDNTLEEGTIMVDRSFFFGPTEIAALRRLLPFHLRKRSTTFDIITACWWCCRTKALQLKPEEEVRMMCIINSRSRFNPPLPVGYYGNGFVFPATVTTVGKLCGNPFAYVVDLIRKVKDEVTEEYVHSVADFMVLKGQCLFTSVRSCIVSDLTCARFREVDFGWGKAVYGGVAKGGAGPFPGATFLTPSKNAIGEEGILLPICLPVETMERFAKELNDMIGNHDQPTVSGTRFIMSTL. 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05855 458 Pfam Transferase family 12 438 - -
Seca1g05855 458 Gene3D - 11 215 IPR023213 -
Seca1g05855 458 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 20 436 - -
Seca1g05855 458 Gene3D - 216 436 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05855 Seca-Chr1 161910254 161913319 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05855 20 436 Monolignol Biosynthesis Gene Families AT5G48930 29.817 3.85e-47 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05855 K19861 - gmx:100792864 657.907