Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05852 ATGGCAATCAACTTGAGGCCGTTTAAGTTGACCGATGTAGATGATTTCATGTTAATGGCAGGTGACGATAAAGTAACCTGCCATACCCGATGGAACACTTTTGTTTCCAGGGACCAAGCTTTGACTTTCATTCGAGATGTGTGCATGCCTCACCCATGGAATCGATCCATATGCATTGATGATCAAACTATTGGATTTATATCTGTGTCTCCTGGATCAGGTGATGACAGGTGTAGGGCAGAGATAAGCTATGCTATAGCTGCCAAGTATTGGGGCCAAGGGATATGCACCAAAGCAGTGAAGATGGCTGTGTCACAAGTCTTCAAGGACTTCCCTGATTTGATAAGGATACAAGCTTTTGTTGCTGCAGAGAACAAAGCTTCCCAGAGGGTCTTGGAAAAGGCAGGATTCCTTAGAGAGGGCATACTGAGAAAGTATTCTTATGTCAAGGGCATTATTAAGGATGTGGCTATTTTTAGCATTTTGTCAGAGGACACTCATTCTCCAGAGTAA 513 0.4347 MAINLRPFKLTDVDDFMLMAGDDKVTCHTRWNTFVSRDQALTFIRDVCMPHPWNRSICIDDQTIGFISVSPGSGDDRCRAEISYAIAAKYWGQGICTKAVKMAVSQVFKDFPDLIRIQAFVAAENKASQRVLEKAGFLREGILRKYSYVKGIIKDVAIFSILSEDTHSPE. 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05852 170 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 3 166 - -
Seca1g05852 170 Pfam Acetyltransferase (GNAT) domain 4 137 IPR000182 GO:0016747
Seca1g05852 170 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 3 162 IPR016181 -
Seca1g05852 170 Gene3D - 2 165 - -
Seca1g05852 170 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 3 155 IPR000182 GO:0016747
Seca1g05852 170 CDD NAT_SF 57 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05852 Seca-Chr1 161886927 161887439 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Seca1g05852 Acetyltransf_3 4.8e-22 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05852 - - gmx:100776526 256.529