Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05850 ATGGCACCTGTGGTGGATCTGTCTAGGATTAGTCTCCGGCCATTCAAGCTAAGCGATGTTGACGATTTCTTGTTATGGGCAGGGGATGATCAAGTCACTAGAAATATCCGATGGAAAACATGTGGATCGAGGGAAGAGGCTTTGAATTTCATTAGGGATGTTTGCATACCTCACCCTTGGCGCCGCAATATGGCAATCAACTTGTCAAGAATCACCCTGAGGCCGTTTAAGTTGACTGATGTAGATGATTTCATGTTAATGGCAGGTGATGATAAAGTGACATGCCATACCAGATGGAACACTTTTGTTTCCAGGGACCAAGCTCTGACTTTCATTCGAGATGTGTGGATGCCTCACCCATGGAATCGATCCATATGCATTGATGATCAAACTATTGGATTTATATCAGTGTCTCCTGGATCAGGTGATGACAGGTGTAGGGCAGACATAGGCTATGCTATAGCTGCCAAGTATTGGGGCCAAGGGATTTGCACCAAAGCAGTGAAGATGGCCGTGTCACAAGTCTTCAAGGACTTCCCTGATTTGATAAGGATACAAGCTTTTGTTGCTGCAGGGAACAAAGCTTCCCAGAGGGTCTTGGAAAAGGTAGGATTTCTTAGAGAGGGCATACTGAGAAAGTATTCTTATGTCAAGGGCATTGTTAAGGATGTGGCTATTTTTAGCCTTTTGTCAGAGGATACTCATTCTCCAGAGTAA 717 0.4449 MAPVVDLSRISLRPFKLSDVDDFLLWAGDDQVTRNIRWKTCGSREEALNFIRDVCIPHPWRRNMAINLSRITLRPFKLTDVDDFMLMAGDDKVTCHTRWNTFVSRDQALTFIRDVWMPHPWNRSICIDDQTIGFISVSPGSGDDRCRADIGYAIAAKYWGQGICTKAVKMAVSQVFKDFPDLIRIQAFVAAGNKASQRVLEKVGFLREGILRKYSYVKGIVKDVAIFSLLSEDTHSPE. 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05850 238 Gene3D - 67 233 - -
Seca1g05850 238 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 9 66 - -
Seca1g05850 238 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 9 60 IPR016181 -
Seca1g05850 238 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 71 223 IPR000182 GO:0016747
Seca1g05850 238 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 67 230 IPR016181 -
Seca1g05850 238 Pfam Acetyltransferase (GNAT) domain 70 205 IPR000182 GO:0016747
Seca1g05850 238 Gene3D - 3 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05850 Seca-Chr1 161863862 161866422 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Seca1g05850 Acetyltransf_3 1.8e-23 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05850 - - gmx:100776526 263.462