Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05843 ATGGGATGTGTGATTAGCCGCGAAGCTTCGTCGGGAATAATCTCGGAGGCGAAGGAGGAGAAGCGGTTAGGTAGTGAGTGTGACAGGAAGGTTGATGGCGTCTCGGGGAAGGAGACGGTGATAGAGGTTCAGAATGGTGGGAACGAGAAGAAGGAGAAGGTAAAGGAAAACGGTGGTGGCGGTGATGGGATTCACCGGCCACGGGGAGAAAGAAGAAGATCAAAGGGGAACCCGAGGCTAAGTAATCCGCCCAAGCATTTGCGTGGGGAGCAGGTTGCAGCTGGGTGGCCACCTTGGCTCACTGCAGTTTGTGGGGAAGCACTCAATGGCTGGATTCCACGAAAGGCTGACACCTTTGAGAAAATTGATAAGATTGGGCAAGGAACTTATAGTAATGTGTACAAAGCTAAAGACACTTTGACGGGTAAAATTGTTGCTCTAAAAAAGGTTCGGTTTGACAATTTGGAACCTGAGAGCGTAAAATTCATGGCTAGAGAGATTCTTATTTTGCGGAGGTTGGATCATCCCAATGTTGTAAAGTTGCAAGGTTTAGTTACATCAAGGATGTCCTGTAGTTTGTATTTGGTGTTCGATTACATGGAGCATGATTTAGCTGGACTTGCTGCAAGCCCAGGAATCAGGTTCACTGAGCCTCAGGTAAAATGTTACATGCATCAGCTGCTATCAGGACTTGAGCACTGTCATAACCGTCATGTACTTCACCGGGATATTAAAGGATCAAATCTTCTTATTGATAATGAAGGAATACTTAAGATTGCTGACTTTGGACTGGCATCTGTGTTTGATCCAAACCATAAGCATCCCATGACTAGTCGTGTAGTAACCCTTTGGTATCGGCCTCCTGAATTGCTTCTTGGTGCCACAGATTATGGGGTGGGAATAGACCTTTGGAGTGCTGGATGTATTTTAGGGGAGTTATTGGCTGGGAAGCCAATTATGCCTGGTCGTACAGAGGTGGAGCAACTGCATAAGATATACAAACTATGTGGTTCACCTTCTGATGAGTATTGGAAGAAGTCAAAGTTGCCTAATGCTACCTTGTTTAAACCTCGGGAGCCATACAAGAGATGTATAAGAGAGACATTTAAAGATTTTCCACCCTCTGCTCTAACCCTTATTGATACTCTTCTTGCAATTGATCCTGTTGAAAGGAAAACTGCCTCAGATGCTTTAAGAAGTGAGTTCTTTACTACAGAACCTTATGCATGTGATCCTTCTAGTCTTCCAAAATATCCCCCAAGCAAAGAAATGGATGCTAGACGACGGGATGATGAAGTGAGGAGGTTCAGACAAAGAGCTGCAGGCAAAGCTCAGGTTGATGGTCCGAAGAAGCATCGGACACGTGATCGTGCTGTGAAAGCTTTTCCTGCTCCTGAAGCCAATGCTGAGCTTCAATCCAATATTGATAGAAGACGTCTAATCACTCATGCAAATGCTAAGAGCAAGAGTGAAAAGTTCCCTCCACCACATCAAGATGGACAACTTGGCGTTCCTTTGGGATCTTCACATCATATAGATCCGGATACTGTTCCTATCGATGTCTCTTTCACTTCAACCTCATATACTTATTCAAAGGAGCCATTCCAAGCTTGGTCAGGTCCTATTGGTAGTGCTGCTGACATTGGAGTGCCGAAGCGGAAGAAACACGCTGCAGGTGATGCATTGGATTTATCAAAACCACAGAAAGGTACCCTCAAGGATAAAGTTAAAGGAAAGAAAATCACAGCTTAG 1752 0.4492 MGCVISREASSGIISEAKEEKRLGSECDRKVDGVSGKETVIEVQNGGNEKKEKVKENGGGGDGIHRPRGERRRSKGNPRLSNPPKHLRGEQVAAGWPPWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLQGLVTSRMSCSLYLVFDYMEHDLAGLAASPGIRFTEPQVKCYMHQLLSGLEHCHNRHVLHRDIKGSNLLIDNEGILKIADFGLASVFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGIDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYKRCIRETFKDFPPSALTLIDTLLAIDPVERKTASDALRSEFFTTEPYACDPSSLPKYPPSKEMDARRRDDEVRRFRQRAAGKAQVDGPKKHRTRDRAVKAFPAPEANAELQSNIDRRRLITHANAKSKSEKFPPPHQDGQLGVPLGSSHHIDPDTVPIDVSFTSTSYTYSKEPFQAWSGPIGSAADIGVPKRKKHAAGDALDLSKPQKGTLKDKVKGKKITA. 584
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05843 583 MobiDBLite consensus disorder prediction 549 583 - -
Seca1g05843 583 MobiDBLite consensus disorder prediction 44 77 - -
Seca1g05843 583 MobiDBLite consensus disorder prediction 421 460 - -
Seca1g05843 583 SMART serkin_6 119 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05843 583 MobiDBLite consensus disorder prediction 472 494 - -
Seca1g05843 583 CDD STKc_CDK9_like 119 403 - -
Seca1g05843 583 FunFam probable serine/threonine-protein kinase At1g54610 106 201 - -
Seca1g05843 583 SUPERFAMILY Protein kinase-like (PK-like) 113 410 IPR011009 -
Seca1g05843 583 MobiDBLite consensus disorder prediction 34 91 - -
Seca1g05843 583 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524
Seca1g05843 583 PANTHER CELL DIVISION PROTEIN KINASE 117 407 - -
Seca1g05843 583 Gene3D Phosphorylase Kinase; domain 1 106 201 - -
Seca1g05843 583 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Seca1g05843 583 MobiDBLite consensus disorder prediction 411 509 - -
Seca1g05843 583 Gene3D Transferase(Phosphotransferase) domain 1 202 442 - -
Seca1g05843 583 FunFam probable serine/threonine-protein kinase At1g54610 202 445 - -
Seca1g05843 583 MobiDBLite consensus disorder prediction 541 583 - -
Seca1g05843 583 Pfam Protein kinase domain 119 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05843 583 ProSiteProfiles Protein kinase domain profile. 119 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca1g05843 Seca-Chr1 161782275 161787780 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05843 111 455 Core Cell Cycle Gene Families AT5G10270 51.247 4.39e-122 368
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Seca1g05843 Pkinase 5.6e-67 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05843 K08819 - gmx:100786837 1041.95