Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05839 ATGGGCGCGCCGAAGAAAAGCGCCGCTAGGGTTTCGGAGGATGCCGACGAATTGGTGCGGGTTCCTTTGCAGGCCATCCTTTTGGCGGATAGTTTCACCACCAAATTCAGACCTATCACGCTCGAACGTCCTAAAGTGCTGTTGCCATTAGTGAATGTTCCCATGATAGATTACACCTTGACTTGGCTCGAATCTGCTGGTGTCGAAGAAGTTTTTGTTTTCTGCTGTTCTCATGCCAAGCAGGTGATTAACTATTTGGAGAAATCTGAGTGGTTCTCTCAACCAAATTTTACTGTAACTACTATAGAGTCACAGAATTCTGTGAGCGCTGGAGATGCTCTGCGTGTAATATATGAGCGCAATGTGATACAAGGAGACTTTGTCCTCATCAGTGGAGACACTATAAGCAACATGTCGCTTACTGAGGCACTTCTAGAACATAAAGAAAGGAAGAAGAAAGATAGTAACGCTGTAATGACAATGGTCATCAAGCGGTCAAAACCTAATCCAGCTATCCATCAGTCTCGACTTGGTACTGATGAAATTTTCATGGCCATTGATCCTAATACTAAGCAACTTTTGTATTATGAGGATAAGGCAGACTATTCTAAAGGCATTCTACATCTTGACAAGTCATTGCTTGTTGACAATCCTTCTCTCTCTCTGCACCATGACAAGCAGGATTGTTACATTGACATTTGCTCGCCAGAAGTCCTTAGCCTATTTACCGACAATTTTGACTACCAACATCTACGGCGTCATTTTGTAAAGGGATTGCTTCTTGATGATATAATGGGGTACAAGATTTTTGTTCATGAAATCCACTCAAACTATGCTGCAAGGATTGATAATTTCAGAAGCTATGACACTGTCAGCAAGGATATAATTCATAGATGGACATATCCATTGGTACCAGATGTTATGAATTTTGGCAACACAGCTACTAAACTTGAACGAAAAGGAATATATCGTGCTTCGGAAATATCGCAATCACAATCTGCTGTTATTGGCCCATTCACTGTTATAGGATCTAGCACCAAAATTGGGGATGACACTAAAATTTCAAATTCTGTTATTGGAGAAGGATGTAAAATTGGGTCAAATGTACATATAGAGGGGTGCTATATATGGGACAACATCACCATAGAAGATGGCTGTAAACTTAGGCATGCAATTGTATGTGATGGGGTTACCATGAAGTCAGGAGCTGTTCTGGAACCTGGTGTTGTTTTGTCTTTCAAGGTTGTAGTTGGGCAGGAGTTCGTTGTTCCTCCTTATTCAAAAGTGTCTCTACTACAGCAGCCAATTGAGGAAGATAGTGATGAGGAGCTTGAATATGCTGATAGTGCTAGTGCCATCACCAGCACTGCGGATAAGTCCGATGTAGAGATTGCTTCCCAATCATTGGAGACACATTTTAGCACAGCATCAGAGCTAGGTATGGGTGGGGTTGGTTATGTATGGCCAAAATGTGAAGGTGGCCATGAAGAAGAATGGAGGCAATCAGTGGCGCCTATCACTGCAGATAAAATTTTGGAGGCAATGAAAGCTATGGAAGATGATCTGGAGTTAACTCATGATGGCAGTATTCTTCCACCTTCTGGGGAGCTGCAACCTAATTCTAATGATTCAGACGATGATGTTAATGATGATTCTAGAGATGACATTTATTCCTTTGAGGAAGAAGTTGAAGCAACATTTCTCAGGGCTGTTGATGAAAACATACAAGATGACAATTTGATCTTAGAAGTCAACTCTTTGAAGTTGTCATACAATAAGATAACTGCTGATTGTGCTGGAGCTGTATTTTATGCAATGATGAAGTATGCTTTGAACATACCCCATAGTTCAGCTGGTGAGTTTTCATCCCTTCTCTCTATTGCCACAATGCCACCTGATCCTTCTAATATTTTCCATTCATTTTTTTACAAGGCATTTCTTATTAAATCAAGATAA 1956 0.409 MGAPKKSAARVSEDADELVRVPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMIDYTLTWLESAGVEEVFVFCCSHAKQVINYLEKSEWFSQPNFTVTTIESQNSVSAGDALRVIYERNVIQGDFVLISGDTISNMSLTEALLEHKERKKKDSNAVMTMVIKRSKPNPAIHQSRLGTDEIFMAIDPNTKQLLYYEDKADYSKGILHLDKSLLVDNPSLSLHHDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFVHEIHSNYAARIDNFRSYDTVSKDIIHRWTYPLVPDVMNFGNTATKLERKGIYRASEISQSQSAVIGPFTVIGSSTKIGDDTKISNSVIGEGCKIGSNVHIEGCYIWDNITIEDGCKLRHAIVCDGVTMKSGAVLEPGVVLSFKVVVGQEFVVPPYSKVSLLQQPIEEDSDEELEYADSASAITSTADKSDVEIASQSLETHFSTASELGMGGVGYVWPKCEGGHEEEWRQSVAPITADKILEAMKAMEDDLELTHDGSILPPSGELQPNSNDSDDDVNDDSRDDIYSFEEEVEATFLRAVDENIQDDNLILEVNSLKLSYNKITADCAGAVFYAMMKYALNIPHSSAGEFSSLLSIATMPPDPSNIFHSFFYKAFLIKSR. 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05839 651 FunFam Trimeric LpxA-like enzyme 316 449 - -
Seca1g05839 651 CDD eIF-2B_epsilon_N 23 239 IPR035543 -
Seca1g05839 651 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 10 303 IPR029044 -
Seca1g05839 651 Gene3D - 547 635 - -
Seca1g05839 651 Gene3D Hexapeptide repeat proteins 318 458 - -
Seca1g05839 651 FunFam Translation initiation factor eIF-2B subunit epsilon 12 303 - -
Seca1g05839 651 CDD W2_eIF2B_epsilon 558 623 IPR044123 GO:0005085|GO:0031369
Seca1g05839 651 MobiDBLite consensus disorder prediction 525 553 - -
Seca1g05839 651 Pfam Nucleotidyl transferase 25 165 IPR005835 GO:0009058
Seca1g05839 651 SUPERFAMILY Nucleotide-diphospho-sugar transferases 20 369 IPR029044 -
Seca1g05839 651 CDD LbH_eIF2B_epsilon 341 419 - -
Seca1g05839 651 SUPERFAMILY Trimeric LpxA-like enzymes 267 429 IPR011004 -
Seca1g05839 651 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON 8 620 - -
Seca1g05839 651 SUPERFAMILY ARM repeat 559 620 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05839 Seca-Chr1 161749585 161759008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05839 1 621 Eukaryotic Initiation Factors Gene Family AT2G34970 65.127 0.0 815
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05839 K03240 - gmx:100784894 1066.99