Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05838 ATGGCTGTTGATTTAAGTTACGCACTTTCAAAACTGCATATGCTAACCACTTCAGATTATGCCTCCGTAATCTCAATGAACCTATTTGTGGCTCTGCTATGTGCCTGTATTGTCATTGGCCATCTTCTTGAGGAGAATAGATGGGTGAATGAGTCTATCACTGCCCTTTTGATAGGTCTTTGTGTTGGCGTGGTCATTTTGTTGATTAGCCGCGGTAAAAGCTCGCATCTTCTTGTTTTCAGTGAAGATCTTTTCTTTATATACCTTCTGCCACCCATCATATTTAACGCCGGGTTTCAGGTGAAAAAGAAGCAGTTTTTTGTTAACTTCATGACCATCATGCTGTTTGGTGCTATTGGTACATTAATAAGCTGTAGCATCATAAGTTTCGGTGTCACACAAATTTTTAAGAGGATAGGTATTGGTTCACTGGATATAGGAGATTATCTAGCAATTGGTGCAATATTTGCTGCAACAGATTCTGTGTGCACATTACAGGTGCTAAACCAGGATGAGACACCTTTATTATACAGTCTTGTGTTTGGCGAGGGCGTTGTGAATGATGCTACATCAGTGGTGCTTTTCAATGCAATCAAAAGTTTTGACCTTAACCAAATCGACCACAAAATTGCTTTGCATTTTATTGGCAACTTCTTGTATCTGTTTACAGCAAGCACCATGCTTGGGGTTTTGGCTGGTCTACTTAGTGCTTACATTATTAAAAAGCTGTATATTGGCAGGCACTCTACAGATCGTGAGGTTGCTCTTATGATGTTAATGGCATACCTTTCCTACATTCTGGCTGAATTATGGTATCTGAGTGGCATTCTCACTGTATTCTTTTGTGGGATTGTTATGTCTCATTATACATGGCATAATGTGACTGAGAGCTCAAGAATCACTACAAAACACGCTTTTGCAACCCTGTCCTTTGTTGCTGAGACCTTTATCTTCCTTTATGTTGGTATGGATGCCTTGGACATTGAAAAATGGAGATTTGTTAGTGATAGGCCTGGAACATCTGTTATTGTGAGTTCAGTATTATTGGCTCTAGTACTTGCTGGAAGAGCAGCATTCGTTTTCCCCTTATCCTTCATTTCCAACCTTGCTAAAAAGTCACCAAATGAGAAAATAAGCATCAGGCAGCAGGTGATCATTTGGTGGGCTGGTCTAATGAGAGGTGCTGTTTCAATGGCACTTGCCTATAATCAGTTCACCATGTCTGGGCATACTCAACTGCGATCCAATGCTATCATGATCACCAGCACCATCACTGTTGTGCTTGTCAGCACAGTGGTGTTTGGTTTGATGACAAAGCCATTAATAAGGTACTTGCTGCCTCTTAATCCCCCTCCTCCTAAACGCAAGAACAGCCTGGCAAACATGGAATCATGTTCACCAAAATCAATCACTGTACCATTTCTTGGAGGTGCCCAAGATTCCGAAGCTGATGTGGATGGCAGTGAAATTCATCGTCCAAGCAGCATCCGTGACTTGCTAACCACTCCAACACACACTGTTCATCGCTTATGGCGTAAGTTTGATAATGCAGTTATGCGTCCAGTTTTTGGTGGCAGGGGTTTTGTTCCGGTAGAACCTAGCTCGCCAACTAAACGCACAGGCACAGGTCATAATCAGCGGCATTAA 1647 0.4196 MAVDLSYALSKLHMLTTSDYASVISMNLFVALLCACIVIGHLLEENRWVNESITALLIGLCVGVVILLISRGKSSHLLVFSEDLFFIYLLPPIIFNAGFQVKKKQFFVNFMTIMLFGAIGTLISCSIISFGVTQIFKRIGIGSLDIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIKSFDLNQIDHKIALHFIGNFLYLFTASTMLGVLAGLLSAYIIKKLYIGRHSTDREVALMMLMAYLSYILAELWYLSGILTVFFCGIVMSHYTWHNVTESSRITTKHAFATLSFVAETFIFLYVGMDALDIEKWRFVSDRPGTSVIVSSVLLALVLAGRAAFVFPLSFISNLAKKSPNEKISIRQQVIIWWAGLMRGAVSMALAYNQFTMSGHTQLRSNAIMITSTITVVLVSTVVFGLMTKPLIRYLLPLNPPPPKRKNSLANMESCSPKSITVPFLGGAQDSEADVDGSEIHRPSSIRDLLTTPTHTVHRLWRKFDNAVMRPVFGGRGFVPVEPSSPTKRTGTGHNQRH. 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05838 548 NCBIfam sodium/hydrogen exchanger 3 25 445 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca1g05838 548 PRINTS Na+/H+ exchanger signature 98 112 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca1g05838 548 PRINTS Na+/H+ exchanger signature 84 95 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca1g05838 548 PRINTS Na+/H+ exchanger signature 153 163 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca1g05838 548 PRINTS Na+/H+ exchanger signature 113 121 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca1g05838 548 PANTHER SODIUM/HYDROGEN EXCHANGER 14 523 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Seca1g05838 548 MobiDBLite consensus disorder prediction 526 548 - -
Seca1g05838 548 Gene3D - 146 197 - -
Seca1g05838 548 Pfam Sodium/hydrogen exchanger family 29 442 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05838 Seca-Chr1 161740545 161746182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05838 10 540 Antiporters AT3G05030 76.173 0.0 830
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05838 - - gmx:100787925 870.537